Personal tools

CL:1000280

From FANTOM5_SSTAR

Revision as of 13:50, 8 February 2012 by Autoedit (talk | contribs) (Created page with "{{CL |id=CL:1000280 |name=smooth muscle cell of colon |namespace=cell |def="A smooth muscle cell that is part of the colon." [GOC:tfm] |xref=FMA:15663 |is_a=CL:0002504 ...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Name:smooth muscle cell of colon
Namespace:cell
Definition:"A smooth muscle cell that is part of the colon." [GOC:tfm]
Xrefs:
links:
FMA:15663
Synonyms: "non-striated muscle fiber of colon" EXACT [FMA:15663]


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0002504(enteric smooth muscle cell)
part_of:UBERON:0001155(colon)



Children


derives from:FF:0000181 (human smooth muscle of colon sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:1000280 (smooth muscle cell of colon), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data