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Coexpression cluster:C73

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Full id: C73_pineal_eye_retina_caudate_cerebellum_left_parietal



Phase1 CAGE Peaks

Hg19::chr10:103595043..103595082,-p@chr10:103595043..103595082
-
Hg19::chr10:103603714..103603739,-p4@KCNIP2
Hg19::chr10:115803417..115803428,-p@chr10:115803417..115803428
-
Hg19::chr10:115803446..115803457,-p@chr10:115803446..115803457
-
Hg19::chr10:115803583..115803609,+p2@ADRB1
Hg19::chr10:115803618..115803641,+p1@ADRB1
Hg19::chr10:115803650..115803661,+p4@ADRB1
Hg19::chr10:30389039..30389064,+p@chr10:30389039..30389064
+
Hg19::chr10:78900397..78900404,-p@chr10:78900397..78900404
-
Hg19::chr10:78900413..78900422,-p@chr10:78900413..78900422
-
Hg19::chr10:78900431..78900445,-p@chr10:78900431..78900445
-
Hg19::chr10:78900483..78900510,-p@chr10:78900483..78900510
-
Hg19::chr10:81664635..81664675,+p1@MBL1P
Hg19::chr11:113452850..113452877,+p@chr11:113452850..113452877
+
Hg19::chr11:122852529..122852549,-p1@BSX
Hg19::chr11:122852557..122852570,-p2@BSX
Hg19::chr11:123229399..123229419,+p@chr11:123229399..123229419
+
Hg19::chr11:123300812..123300821,+p11@ENST00000533341
p11@uc001pyu.2
Hg19::chr11:123300840..123300865,+p4@ENST00000533341
p4@uc001pyu.2
Hg19::chr11:18039672..18039678,-p@chr11:18039672..18039678
-
Hg19::chr11:18040537..18040547,-p@chr11:18040537..18040547
-
Hg19::chr11:18040944..18040946,-p@chr11:18040944..18040946
-
Hg19::chr11:18041194..18041197,-p@chr11:18041194..18041197
-
Hg19::chr11:18041199..18041200,-p@chr11:18041199..18041200
-
Hg19::chr11:18041206..18041211,-p@chr11:18041206..18041211
-
Hg19::chr11:18041244..18041266,-p@chr11:18041244..18041266
-
Hg19::chr11:18041323..18041328,-p@chr11:18041323..18041328
-
Hg19::chr11:18042314..18042326,-p@chr11:18042314..18042326
-
Hg19::chr11:18042358..18042391,-p@chr11:18042358..18042391
-
Hg19::chr11:18042393..18042396,-p@chr11:18042393..18042396
-
Hg19::chr11:18042402..18042441,-p@chr11:18042402..18042441
-
Hg19::chr11:18042446..18042463,-p@chr11:18042446..18042463
-
Hg19::chr11:18042584..18042593,-p@chr11:18042584..18042593
-
Hg19::chr11:18053180..18053192,-p@chr11:18053180..18053192
-
Hg19::chr11:18067959..18067962,-p@chr11:18067959..18067962
-
Hg19::chr11:20064625..20064630,+p@chr11:20064625..20064630
+
Hg19::chr12:107676569..107676576,-p@chr12:107676569..107676576
-
Hg19::chr12:115761444..115761449,-p@chr12:115761444..115761449
-
Hg19::chr12:115775302..115775305,-p@chr12:115775302..115775305
-
Hg19::chr12:115775389..115775392,-p@chr12:115775389..115775392
-
Hg19::chr12:115775465..115775467,-p@chr12:115775465..115775467
-
Hg19::chr12:115775564..115775579,-p@chr12:115775564..115775579
-
Hg19::chr12:119419336..119419353,+p1@SRRM4
Hg19::chr12:128210605..128210613,-p@chr12:128210605..128210613
-
Hg19::chr12:128210616..128210625,-p@chr12:128210616..128210625
-
Hg19::chr12:128210626..128210641,-p@chr12:128210626..128210641
-
Hg19::chr12:128210666..128210685,-p@chr12:128210666..128210685
-
Hg19::chr12:131517200..131517208,-p@chr12:131517200..131517208
-
Hg19::chr12:14956076..14956089,+p4@C12orf60
Hg19::chr12:14956107..14956118,+p6@C12orf60
Hg19::chr12:14956583..14956636,+p1@C12orf60
Hg19::chr12:15134610..15134617,+p@chr12:15134610..15134617
+
Hg19::chr12:55422293..55422300,+p@chr12:55422293..55422300
+
Hg19::chr12:55422565..55422604,+p@chr12:55422565..55422604
+
Hg19::chr12:55422858..55422866,+p@chr12:55422858..55422866
+
Hg19::chr12:5542952..5542976,-p@chr12:5542952..5542976
-
Hg19::chr12:56582028..56582062,+p@chr12:56582028..56582062
+
Hg19::chr12:6956468..6956483,+p@chr12:6956468..6956483
+
Hg19::chr12:71314319..71314322,-p14@PTPRR
Hg19::chr12:71314547..71314562,-p8@PTPRR
Hg19::chr12:96629369..96629384,-p@chr12:96629369..96629384
-
Hg19::chr12:97924299..97924308,+p4@RMST
Hg19::chr12:99734965..99734976,-p@chr12:99734965..99734976
-
Hg19::chr13:21406211..21406218,-p@chr13:21406211..21406218
-
Hg19::chr14:104698553..104698562,+p@chr14:104698553..104698562
+
Hg19::chr14:48145321..48145332,-p@chr14:48145321..48145332
-
Hg19::chr14:49258125..49258147,-p@chr14:49258125..49258147
-
Hg19::chr14:81668867..81668869,+p@chr14:81668867..81668869
+
Hg19::chr15:78913665..78913673,-p9@CHRNA3
Hg19::chr15:79575053..79575072,+p2@ANKRD34C
Hg19::chr16:1764182..1764224,-p@chr16:1764182..1764224
-
Hg19::chr16:49524879..49524905,-p@chr16:49524879..49524905
-
Hg19::chr16:49524938..49524959,-p@chr16:49524938..49524959
-
Hg19::chr16:67918770..67918820,+p1@NRN1L
Hg19::chr17:21454351..21454386,-p@chr17:21454351..21454386
-
Hg19::chr17:4348321..4348326,+p@chr17:4348321..4348326
+
Hg19::chr17:55484129..55484139,+p@chr17:55484129..55484139
+
Hg19::chr17:55683829..55683832,+p@chr17:55683829..55683832
+
Hg19::chr17:63215814..63215840,+p@chr17:63215814..63215840
+
Hg19::chr17:63215855..63215879,+p@chr17:63215855..63215879
+
Hg19::chr17:74463567..74463574,+p4@AANAT
Hg19::chr17:74463650..74463673,+p3@AANAT
Hg19::chr17:74463679..74463701,+p1@AANAT
Hg19::chr17:74463711..74463736,+p2@AANAT
Hg19::chr17:7559616..7559627,+p12@ATP1B2
Hg19::chr17:7560307..7560312,+p19@ATP1B2
Hg19::chr17:9801406..9801413,-p@chr17:9801406..9801413
-
Hg19::chr17:9808887..9808897,-p7@RCVRN
Hg19::chr18:56963107..56963117,-p@chr18:56963107..56963117
-
Hg19::chr19:12941455..12941458,-p7@RTBDN
Hg19::chr19:1417437..1417456,+p@chr19:1417437..1417456
+
Hg19::chr19:2189209..2189212,+p@chr19:2189209..2189212
+
Hg19::chr19:2189225..2189231,+p@chr19:2189225..2189231
+
Hg19::chr19:2189232..2189243,+p@chr19:2189232..2189243
+
Hg19::chr19:2189245..2189252,+p@chr19:2189245..2189252
+
Hg19::chr19:39027743..39027757,-p@chr19:39027743..39027757
-
Hg19::chr19:40854890..40854898,-p6@C19orf47
Hg19::chr19:4456764..4456784,+p@chr19:4456764..4456784
+
Hg19::chr19:46001697..46001729,+p7@PPM1N
Hg19::chr19:49517640..49517650,+p@chr19:49517640..49517650
+
Hg19::chr1:100315742..100315749,+p7@AGL
Hg19::chr1:110167651..110167701,+p25@AMPD2
Hg19::chr1:151700765..151700783,+p2@RIIAD1
Hg19::chr1:154540028..154540037,+p4@CHRNB2
Hg19::chr1:156786260..156786268,-p15@SH2D2A
Hg19::chr1:201509224..201509227,+p@chr1:201509224..201509227
+
Hg19::chr1:223254666..223254683,-p@chr1:223254666..223254683
-
Hg19::chr1:244192126..244192127,+p@chr1:244192126..244192127
+
Hg19::chr1:57906101..57906119,+p@chr1:57906101..57906119
+
Hg19::chr1:57906878..57906904,+p@chr1:57906878..57906904
+
Hg19::chr1:57914395..57914398,+p@chr1:57914395..57914398
+
Hg19::chr1:57975398..57975401,+p@chr1:57975398..57975401
+
Hg19::chr1:77424411..77424419,+p@chr1:77424411..77424419
+
Hg19::chr1:77480661..77480670,+p@chr1:77480661..77480670
+
Hg19::chr1:97922018..97922033,-p@chr1:97922018..97922033
-
Hg19::chr20:23168592..23168636,+p1@uc002wsw.1
Hg19::chr20:44991864..44991887,-p10@SLC35C2
Hg19::chr20:48098996..48099010,-p6@KCNB1
Hg19::chr20:48099013..48099034,-p5@KCNB1
Hg19::chr22:25723196..25723199,+p1@ENST00000433457
Hg19::chr22:46457398..46457428,+p@chr22:46457398..46457428
+
Hg19::chr2:108602341..108602352,+p@chr2:108602341..108602352
+
Hg19::chr2:108602414..108602423,+p@chr2:108602414..108602423
+
Hg19::chr2:108602711..108602722,+p3@SLC5A7
Hg19::chr2:108602728..108602775,+p2@SLC5A7
Hg19::chr2:108602872..108602882,+p5@SLC5A7
Hg19::chr2:108602971..108602986,+p1@SLC5A7
Hg19::chr2:108616342..108616384,+p@chr2:108616342..108616384
+
Hg19::chr2:154265434..154265447,+p@chr2:154265434..154265447
+
Hg19::chr2:159651821..159651836,+p1@DAPL1
Hg19::chr2:17064630..17064651,+p@chr2:17064630..17064651
+
Hg19::chr2:17065916..17065929,+p@chr2:17065916..17065929
+
Hg19::chr2:17075761..17075773,+p@chr2:17075761..17075773
+
Hg19::chr2:17099595..17099598,+p@chr2:17099595..17099598
+
Hg19::chr2:17130301..17130351,+p@chr2:17130301..17130351
+
Hg19::chr2:17141934..17141935,+p@chr2:17141934..17141935
+
Hg19::chr2:17185712..17185735,+p@chr2:17185712..17185735
+
Hg19::chr2:17185958..17185998,+p@chr2:17185958..17185998
+
Hg19::chr2:17186116..17186126,+p@chr2:17186116..17186126
+
Hg19::chr2:182850631..182850647,+p11@PPP1R1C
Hg19::chr2:182850668..182850680,+p10@PPP1R1C
Hg19::chr2:182850711..182850730,+p7@PPP1R1C
Hg19::chr2:182850743..182850754,+p9@PPP1R1C
Hg19::chr2:182850776..182850802,+p3@PPP1R1C
Hg19::chr2:182850817..182850826,+p16@PPP1R1C
Hg19::chr2:182850860..182850893,+p13@PPP1R1C
Hg19::chr2:210443993..210444094,+p4@MAP2
Hg19::chr2:220174166..220174177,-p2@PTPRN
Hg19::chr2:4224059..4224062,-p@chr2:4224059..4224062
-
Hg19::chr2:48705144..48705150,+p@chr2:48705144..48705150
+
Hg19::chr2:55172046..55172064,+p@chr2:55172046..55172064
+
Hg19::chr3:100942376..100942381,-p@chr3:100942376..100942381
-
Hg19::chr3:100942645..100942655,-p@chr3:100942645..100942655
-
Hg19::chr3:139938385..139938390,+p@chr3:139938385..139938390
+
Hg19::chr3:139938398..139938411,+p@chr3:139938398..139938411
+
Hg19::chr3:139938469..139938470,+p@chr3:139938469..139938470
+
Hg19::chr3:139938513..139938517,+p@chr3:139938513..139938517
+
Hg19::chr3:140285829..140285840,+p@chr3:140285829..140285840
+
Hg19::chr3:140285875..140285914,+p@chr3:140285875..140285914
+
Hg19::chr3:179370517..179370531,+p2@USP13
Hg19::chr3:192959104..192959120,+p5@HRASLS
Hg19::chr3:50232232..50232243,+p@chr3:50232232..50232243
+
Hg19::chr3:54952432..54952459,-p@chr3:54952432..54952459
-
Hg19::chr3:99691212..99691254,+p@chr3:99691212..99691254
+
Hg19::chr4:185331325..185331337,-p@chr4:185331325..185331337
-
Hg19::chr4:21054697..21054727,-p@chr4:21054697..21054727
-
Hg19::chr4:2390245..2390256,-p@chr4:2390245..2390256
-
Hg19::chr4:71458016..71458019,+p3@AMBN
Hg19::chr4:9533964..9534018,+p@chr4:9533964..9534018
+
Hg19::chr5:124817523..124817531,-p@chr5:124817523..124817531
-
Hg19::chr5:136362136..136362159,+p@chr5:136362136..136362159
+
Hg19::chr5:150027421..150027440,+p10@AB384087
Hg19::chr5:161494521..161494557,+p7@GABRG2
Hg19::chr5:166406070..166406121,+p@chr5:166406070..166406121
+
Hg19::chr5:166406199..166406230,+p@chr5:166406199..166406230
+
Hg19::chr5:166406261..166406274,+p@chr5:166406261..166406274
+
Hg19::chr5:77072305..77072314,-p6@TBCA
Hg19::chr5:79331200..79331238,+p2@THBS4
Hg19::chr5:86529745..86529749,+p@chr5:86529745..86529749
+
Hg19::chr6:133561725..133561741,+p7@EYA4
Hg19::chr6:158734173..158734183,+p7@TULP4
Hg19::chr6:166091991..166092010,-p@chr6:166091991..166092010
-
Hg19::chr6:170125315..170125326,-p@chr6:170125315..170125326
-
Hg19::chr6:170125341..170125352,-p@chr6:170125341..170125352
-
Hg19::chr6:170125409..170125425,-p@chr6:170125409..170125425
-
Hg19::chr6:33401595..33401617,+p@chr6:33401595..33401617
+
Hg19::chr6:37525756..37525767,+p@chr6:37525756..37525767
+
Hg19::chr6:37527970..37527984,-p@chr6:37527970..37527984
-
Hg19::chr6:42141152..42141168,+p5@GUCA1A
Hg19::chr6:42141181..42141193,+p6@GUCA1A
Hg19::chr6:64281529..64281540,+p46@PTP4A1
Hg19::chr6:64281555..64281558,+p56@PTP4A1
Hg19::chr6:64281591..64281594,+p58@PTP4A1
Hg19::chr6:64281607..64281618,+p38@PTP4A1
Hg19::chr6:81150068..81150069,+p@chr6:81150068..81150069
+
Hg19::chr7:120842768..120842790,-p@chr7:120842768..120842790
-
Hg19::chr7:120969045..120969086,+p1@WNT16
Hg19::chr7:120969099..120969104,+p3@WNT16
Hg19::chr7:129068447..129068450,+p@chr7:129068447..129068450
+
Hg19::chr7:129084265..129084288,-p@chr7:129084265..129084288
-
Hg19::chr7:32468385..32468392,-p@chr7:32468385..32468392
-
Hg19::chr7:66193422..66193442,+p@chr7:66193422..66193442
+
Hg19::chr7:9198682..9198694,-p@chr7:9198682..9198694
-
Hg19::chr7:98519448..98519459,+p@chr7:98519448..98519459
+
Hg19::chr7:98519460..98519490,+p@chr7:98519460..98519490
+
Hg19::chr8:105105807..105105818,+p@chr8:105105807..105105818
+
Hg19::chr8:116127086..116127103,+p@chr8:116127086..116127103
+
Hg19::chr8:1532275..1532281,-p@chr8:1532275..1532281
-
Hg19::chr8:24771037..24771049,-p@chr8:24771037..24771049
-
Hg19::chr8:31496751..31496768,+p12@NRG1
Hg19::chr8:31496771..31496795,+p18@NRG1
Hg19::chr8:31496809..31496826,+p28@NRG1
Hg19::chr8:31902374..31902396,+p@chr8:31902374..31902396
+
Hg19::chr8:42127690..42127695,+p@chr8:42127690..42127695
+
Hg19::chr8:80740022..80740033,-p@chr8:80740022..80740033
-
Hg19::chr8:87751918..87751928,-p@chr8:87751918..87751928
-
Hg19::chr8:87751931..87751947,-p@chr8:87751931..87751947
-
Hg19::chr8:87755821..87755822,-p10@CNGB3
Hg19::chr8:87755854..87755877,-p1@CNGB3
Hg19::chr8:87755941..87755948,-p4@CNGB3
Hg19::chr8:87755995..87756001,-p7@CNGB3
Hg19::chr8:87756009..87756027,-p9@CNGB3
Hg19::chr8:87756039..87756052,-p8@CNGB3
Hg19::chr9:135037433..135037450,+p7@NTNG2
Hg19::chr9:139226325..139226334,+p@chr9:139226325..139226334
+
Hg19::chr9:25264978..25265001,+p@chr9:25264978..25265001
+
Hg19::chr9:25265055..25265082,+p@chr9:25265055..25265082
+
Hg19::chr9:37650858..37650884,+p3@FRMPD1
Hg19::chr9:37650945..37651007,+p1@FRMPD1
Hg19::chr9:37668094..37668097,+p6@FRMPD1
Hg19::chr9:93922017..93922055,+p1@LINC00484
Hg19::chrX:135388147..135388181,+p1@GPR112
Hg19::chrX:1731743..1731750,+p@chrX:1731743..1731750
+
Hg19::chrX:1731755..1731763,+p@chrX:1731755..1731763
+
Hg19::chrX:1731768..1731785,+p@chrX:1731768..1731785
+
Hg19::chrX:1731820..1731834,+p@chrX:1731820..1731834
+
Hg19::chrX:1731838..1731843,+p@chrX:1731838..1731843
+
Hg19::chrX:1733876..1733889,+p3@ASMT
Hg19::chrX:1733941..1733965,+p1@ASMT
Hg19::chrX:1733966..1733993,+p2@ASMT
Hg19::chrX:1734001..1734019,+p4@ASMT
Hg19::chrX:1734031..1734040,+p7@ASMT
Hg19::chrX:1734051..1734062,+p5@ASMT
Hg19::chrX:9846797..9846811,+p@chrX:9846797..9846811
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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