Template:NonRedundantMotifRender

Name:	{{{name}}}
Species:	{{{sample_species}}}
Genomic View:	zenbu , UCSC

Homer de novo Motif Results for CNhs10632_vs_median_8-fold_up-300+50merged

P-value threshold: 1e-15
Matrix similarity threshold: 0.75
Information content threshold: 1.5
Minimum target frequency: 50
Minimum background percentage: -1
Total target sequences = 5327
Total background sequences = 43180

Rank	Motif	Target hits	Background	P-value	Best Match/Details and Motif File
1		9.14%	1.14%	1e-264 (-6.092e+02)	JUN.p2.SwissRegulon.nucfreq More Info/Top 5 Known Motifs Motif File (PWM)
2		11.38%	2.45%	1e-209 (-4.824e+02)	SOX10_si_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
3		7.12%	1.28%	1e-153 (-3.526e+02)	RFX1..5_RFXANK_RFXAP.p2.SwissRegulon.nucfreq More Info/Top 5 Known Motifs Motif File (PWM)
4		14.68%	5.34%	1e-140 (-3.229e+02)	CREB1_f1_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
5		60.12%	44.92%	1e-109 (-2.510e+02)	NFYA_f1_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
6		14.49%	6.31%	1e-99 (-2.296e+02)	BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer More Info/Top 5 Known Motifs Motif File (PWM)
7		26.46%	15.18%	1e-98 (-2.277e+02)	E4F1_f1_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
8		15.02%	7.77%	1e-69 (-1.602e+02)	RFX1_f1_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
9		25.03%	15.74%	1e-67 (-1.553e+02)	SP1_f1_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
10		5.73%	2.01%	1e-55 (-1.284e+02)	ATF1_si_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
11		5.88%	2.10%	1e-55 (-1.280e+02)	NFYB_f1_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
12		11.43%	5.88%	1e-52 (-1.214e+02)	NRF1(NRF)/MCF7-NRF1-ChIP-Seq/Homer More Info/Top 5 Known Motifs Motif File (PWM)
13		14.31%	8.32%	1e-47 (-1.083e+02)	ATF5_CREB3.p2.SwissRegulon.nucfreq More Info/Top 5 Known Motifs Motif File (PWM)
14		4.98%	1.78%	1e-46 (-1.081e+02)	RFX2_f1_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
15		65.83%	56.15%	1e-46 (-1.070e+02)	MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer More Info/Top 5 Known Motifs Motif File (PWM)
16		5.01%	1.87%	1e-44 (-1.018e+02)	Rfx1(HTH)/NPC-Rfx1-ChIP-Seq/Homer More Info/Top 5 Known Motifs Motif File (PWM)
17		45.42%	36.08%	1e-43 (-1.010e+02)	ATF3_f1_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
18		3.57%	1.10%	1e-41 (-9.658e+01)	ATF2.p2.SwissRegulon.nucfreq More Info/Top 5 Known Motifs Motif File (PWM)
19		42.47%	33.66%	1e-40 (-9.269e+01)	PRDM14(Zf)/H1-PRDM14-ChIP-Seq/Homer More Info/Top 5 Known Motifs Motif File (PWM)
20		13.91%	8.44%	1e-39 (-9.111e+01)	ELK1_f1_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
21		8.04%	4.06%	1e-38 (-8.841e+01)	MYB.p2.SwissRegulon.nucfreq More Info/Top 5 Known Motifs Motif File (PWM)
22		43.56%	35.32%	1e-34 (-8.012e+01)	E2F5_do_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
23		51.05%	42.61%	1e-34 (-8.003e+01)	CDX1_f1_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
24		29.05%	22.01%	1e-32 (-7.498e+01)	ELF1(ETS)/Jurkat-ELF1-ChIP-Seq/Homer More Info/Top 5 Known Motifs Motif File (PWM)
25		4.41%	1.84%	1e-31 (-7.364e+01)	BATF_si_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
26		9.31%	5.37%	1e-30 (-7.093e+01)	MAFG_si_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
27		24.69%	18.41%	1e-29 (-6.805e+01)	HBP1_HMGB_SSRP1_UBTF.p2.SwissRegulon.nucfreq More Info/Top 5 Known Motifs Motif File (PWM)
28		25.03%	18.78%	1e-28 (-6.643e+01)	BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer More Info/Top 5 Known Motifs Motif File (PWM)
29		18.64%	13.45%	1e-25 (-5.925e+01)	ZBTB33/GM12878-ZBTB33-ChIP-Seq/Homer More Info/Top 5 Known Motifs Motif File (PWM)
30		25.25%	19.53%	1e-23 (-5.516e+01)	E2F(E2F)/Cell-Cycle-Exp/Homer More Info/Top 5 Known Motifs Motif File (PWM)
31		22.64%	17.33%	1e-22 (-5.185e+01)	MYB_f1_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
32		48.33%	41.62%	1e-22 (-5.177e+01)	SPIB.p2.SwissRegulon.nucfreq More Info/Top 5 Known Motifs Motif File (PWM)
33		5.91%	3.25%	1e-22 (-5.162e+01)	MYB.p2.SwissRegulon.nucfreq More Info/Top 5 Known Motifs Motif File (PWM)
34		1.69%	0.49%	1e-22 (-5.087e+01)	HSF2_si_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
35		87.66%	82.97%	1e-20 (-4.812e+01)	Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq/Homer More Info/Top 5 Known Motifs Motif File (PWM)
36		12.20%	8.41%	1e-20 (-4.724e+01)	NRF1.p2.SwissRegulon.nucfreq More Info/Top 5 Known Motifs Motif File (PWM)
37		49.36%	42.96%	1e-20 (-4.723e+01)	TGIF1_f1_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
38		1.88%	0.62%	1e-20 (-4.671e+01)	CREB1_f1_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
39		3.76%	1.81%	1e-20 (-4.632e+01)	ETS:E-box/HPC7-Scl-ChIP-Seq/Homer More Info/Top 5 Known Motifs Motif File (PWM)
40		13.67%	9.71%	1e-19 (-4.582e+01)	PRGR_f1_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
41		9.01%	5.88%	1e-19 (-4.403e+01)	ZBT7B_si_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
42		50.54%	44.43%	1e-18 (-4.313e+01)	TBP.p2.SwissRegulon.nucfreq More Info/Top 5 Known Motifs Motif File (PWM)
43		3.32%	1.60%	1e-18 (-4.160e+01)	ELF1(ETS)/Jurkat-ELF1-ChIP-Seq/Homer More Info/Top 5 Known Motifs Motif File (PWM)
44		59.59%	53.74%	1e-17 (-4.004e+01)	ISL1_f1_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
45		5.43%	3.16%	1e-17 (-3.975e+01)	SRBP2_f1_HM09 More Info/Top 5 Known Motifs Motif File (PWM)
46		2.97%	1.41%	1e-16 (-3.816e+01)	NFY{A,B,C}.p2.SwissRegulon.nucfreq More Info/Top 5 Known Motifs Motif File (PWM)

Details

Transcriptome profiling

hCAGE	{{{profile_hcage}}}
RNA-seq	{{{profile_rnaseq}}}
smallRNA seq	{{{profile_srnaseq}}}
nanoCAGEscan	{{{profile_cagescan}}}

Sample info

strain	{{{sample_strain}}}
tissue	{{{sample_tissue}}}
dev_stage	{{{sample_dev_stage}}}
sex	{{{sample_sex}}}
age	{{{sample_age}}}
ethnicity	{{{sample_ethnicity}}}
cell_type	{{{sample_cell_type}}}
cell_line	{{{sample_cell_line}}}
collaboration	{{{sample_collaboration}}}
Experimental condition	{{{sample_experimental_condition}}}
disease	{{{sample_disease}}}
cell_lot	{{{sample_cell_lot}}}
cell_catalog	{{{sample_cell_catalog}}}
company	{{{sample_company}}}
donor(cell lot)	{{{sample_donor(cell lot)}}}
Note	{{{sample_note}}}

RNA info

sample_id	{{{sample_id}}}
tube_id	{{{rna_tube_id}}}
box	{{{rna_box}}}
position	{{{rna_position}}}
lot_number	{{{rna_lot_number}}}
catalog_number	{{{rna_catalog_number}}}
RIN	{{{rna_rin}}}
OD260/230	{{{rna_od260/230}}}
OD260/280	{{{rna_od260/280}}}
sample_type	{{{rna_sample_type}}}
extraction_protocol	{{{rna_extraction_protocol}}}
weight_ug	{{{rna_weight_ug}}}
concentration	{{{rna_concentration}}}

Parent ontology

is_a relathionship
{{{is_a}}}

part_of relathionship
{{{part_of}}}

has_quality relathionship
{{{has_quality}}}

Ancestors in FF ontology

Anatomy	Cell type	Disease
UBERON:	CL:	Property "Ancestors in disease facet" (as page type) with input value "{{{ancestors_in_disease_facet}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.DOID: