MCL coexpression mm9:2139

Phase1 CAGE Peaks

	Short description
Mm9::chr15:37664157..37664187,-	p9@Ncald
Mm9::chr6:56311850..56311864,-	p@chr6:56311850..56311864 -
Mm9::chr6:56311867..56311885,-	p@chr6:56311867..56311885 -
Mm9::chr6:56312350..56312380,-	p1@Pde1c

Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

---

GO ID	GO name	FDR corrected p-value
GO:0030276	clathrin binding	0.0132224404946697
GO:0030130	clathrin coat of trans-Golgi network vesicle	0.0132224404946697
GO:0012510	trans-Golgi network transport vesicle membrane	0.0132224404946697
GO:0030660	Golgi-associated vesicle membrane	0.0132224404946697
GO:0030658	transport vesicle membrane	0.0132224404946697
GO:0030140	trans-Golgi network transport vesicle	0.0132224404946697
GO:0030125	clathrin vesicle coat	0.0132224404946697
GO:0030665	clathrin coated vesicle membrane	0.0133488477014198
GO:0030133	transport vesicle	0.014233698148671
GO:0030120	vesicle coat	0.014233698148671
GO:0004114	3',5'-cyclic-nucleotide phosphodiesterase activity	0.014233698148671
GO:0030662	coated vesicle membrane	0.014233698148671
GO:0004112	cyclic-nucleotide phosphodiesterase activity	0.014233698148671
GO:0005798	Golgi-associated vesicle	0.014233698148671
GO:0030118	clathrin coat	0.0161288711390064
GO:0030659	cytoplasmic vesicle membrane	0.0168978828051994
GO:0044433	cytoplasmic vesicle part	0.018963696350062
GO:0030117	membrane coat	0.018963696350062
GO:0048475	coated membrane	0.018963696350062
GO:0015631	tubulin binding	0.018963696350062
GO:0012506	vesicle membrane	0.018963696350062
GO:0008081	phosphoric diester hydrolase activity	0.0210057255474447
GO:0000139	Golgi membrane	0.0213265492945545
GO:0030136	clathrin-coated vesicle	0.0219159455711895
GO:0030135	coated vesicle	0.0247265757976326
GO:0005516	calmodulin binding	0.0292251395178627
GO:0044431	Golgi apparatus part	0.0346942842544783
GO:0016023	cytoplasmic membrane-bound vesicle	0.0473232041672845
GO:0031988	membrane-bound vesicle	0.0473926053613473

Relative expression of the co-expression cluster over median <br>Analyst:

---

"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

---

Cell Type

Ontology term	p-value	n

Uber Anatomy

Ontology term	p-value	n

Disease

Ontology term	p-value	n

TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

---

Novel motifs

JASPAR motifs

Motifs	-log10(p-value)
{{{tfbs_overrepresentation_jaspar}}}