Template:F5samples

Name:	{{{name}}}
Species:	{{{sample_species}}}
Genomic View:	zenbu , UCSC

<script type="text/javascript" charset="utf-8"> var top_motif_d= [ </html> {{#top_motifs_dtarr:{{{top_motifs}}}}} ]; $(document).ready(function() { $('#top_motiftb').html( '

' ); $('#top_motiftb_cont').dataTable( { "sScrollY": "300px", "bPaginate": false, "bScrollCollapse": true, "iDisplayLength": -1, "aaData": top_motif_d, "aoColumns": [ { "sTitle": "Motifs","sWidth": "30px", "fnRender": function(obj) { var id = obj.aData[ obj.iDataColumn ].split("!"); return sReturn = ""+id[1]+""; } }, { "sTitle": "Z-score", "sType": "numeric", "sWidth": "30px"}, ], "aaSorting": [[ 1, "desc" ]] } ); $("#top_motiftb thead th").css('line-height', '34px'); } );

}} -->

Details

Transcriptome profiling

hCAGE	{{{profile_hcage}}}
RNA-seq	{{{profile_rnaseq}}}
smallRNA seq	{{{profile_srnaseq}}}
nanoCAGEscan	{{{profile_cagescan}}}

Sample info

strain	{{{sample_strain}}}
tissue	{{{sample_tissue}}}
dev_stage	{{{sample_dev_stage}}}
sex	{{{sample_sex}}}
age	{{{sample_age}}}
ethnicity	{{{sample_ethnicity}}}
cell_type	{{{sample_cell_type}}}
cell_line	{{{sample_cell_line}}}
collaboration	{{{sample_collaboration}}}
Experimental condition	{{{sample_experimental_condition}}}
disease	{{{sample_disease}}}
cell_lot	{{{sample_cell_lot}}}
cell_catalog	{{{sample_cell_catalog}}}
company	{{{sample_company}}}
donor(cell lot)	{{{sample_donor(cell lot)}}}
Note	{{{sample_note}}}

RNA info

sample_id	{{{sample_id}}}
tube_id	{{{rna_tube_id}}}
box	{{{rna_box}}}
position	{{{rna_position}}}
lot_number	{{{rna_lot_number}}}
catalog_number	{{{rna_catalog_number}}}
RIN	{{{rna_rin}}}
OD260/230	{{{rna_od260/230}}}
OD260/280	{{{rna_od260/280}}}
sample_type	{{{rna_sample_type}}}
extraction_protocol	{{{rna_extraction_protocol}}}
weight_ug	{{{rna_weight_ug}}}
concentration	{{{rna_concentration}}}

Parent ontology

is_a relathionship
{{{is_a}}}

part_of relathionship
{{{part_of}}}

has_quality relathionship
{{{has_quality}}}

Ancestors in ontology (non-development)

Connected ontology terms with is_a, part_of or located_in relathionship <br>Analyst: Hideya Kawaji

CL: Cell type

DOID: Disease
Property "Ancestors in disease facet" (as page type) with input value "{{{ancestors_in_disease_facet}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

UBERON: Anatomy

FF: FANTOM5

Ancestors in ontology (development)

Connected ontology terms with develops_from, derives_from or preceded_by relathionship <br>Analyst: Hideya Kawaji

De novo Motif

<b>Homer de novo Motifs</b><br>Analyst: Michael Rehli

Related Novel Motifs

The values shown are the p-values of novel motifs in FANTOM5 samples. <br>Analyst: Michiel de Hoon

CAGE Library ID:{{{profile_hcage}}}

This sample isn't target for the analysis

Related JASPAR Motifs

The values shown are the p-values of jaspar motifs in FANTOM5 samples. <br>Analyst: Michiel de Hoon

CAGE Library ID:{{{profile_hcage}}}

This sample isn't target for the analysis

Repeat Enrichment

<br>Analyst:

no result for this sample

Relative expression of the co-expression cluster

<br>Analyst: