NonredundantMotifs:47

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

• Name :known47
• db :SWISSREGULON
• Id :NKX6-1,2.p2
• name :NKX6-1,2
• score :0.10111669751939348
  
• External refs:

EntrezGene:NKX6-1
UniProt:NKX6-1

EntrezGene:2
UniProt:2

• Internal refs:

EntrezGene:NKX6-1

EntrezGene:2

Motif matrix

P0 A C G T 1 22.30931 21.438092 7.673808 70.172457 2 24.325415 5.826091 0 91.442161 3 0.99705 11.744536 0.968043 107.884038 4 0 0 9.700364 111.893303 5 0.955093 0.991855 0 119.646719 6 118.721655 0 1.914486 0.957526 7 117.73104 0 0.993391 2.869236 8 0.950568 0.998636 0.978917 118.665546 9 2.945647 1.959559 17.463171 99.22529 10 9.694439 0 99.253511 12.645717 11 30.119807 18.632427 65.075649 7.765784 12 20.336801 21.330884 0.972578 78.953404 13 15.541067 4.841014 5.888014 95.323572