Personal tools

NonredundantMotifs:75

From FANTOM5_SSTAR

Revision as of 17:23, 29 May 2013 by Autoedit (talk | contribs) (Autoedit moved page MotifCluster2013March:Known75 to MotifCluster2013March:Non redundant75 without leaving a redirect: NSchange)
Jump to: navigation, search

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant75
  • db :SWISSREGULON
  • Id :RXRA_VDR(dimer).p2
  • name :RXRA_VDR(dimer)
  • score :0.17179926901070464
  • External refs:
EntrezGene:RXRA_VDR(dimer)
UniProt:RXRA_VDR(dimer)

  • Internal refs:
EntrezGene:RXRA_VDR(dimer)


Motif matrix
POACGT
124.8320281.91725868.6781980.956812
22.928825091.5052371.950234
30.9374773.79516688.7743242.877329
40.9803340.930635.70117588.772157
50.92935591.62649103.82845
678.1554212.8530210.4801064.895749
717.08657149.3428962.95845626.996373
821.0284522.01546432.09153921.248843
912.5597835.56632174.3280593.930133
1052.1792960.95471643.2502840
111.9164751.88188492.5859370
120.9860324.75419624.9551965.688878
138.4460483.7762385.89554878.266462
148.8701280.886221.8922654.735691
1575.53543910.2743548.6014711.973032

Sub Motif Members