UBERON:0001905
From FANTOM5_SSTAR
Name: | pineal body | |
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Definition: | "The pineal body is an unpaired glandular organ subdivision shaped somewhat like a pine cone. It is attached on the midline near the posterior and habenular commissures of the epithalamus." [FMA:62033, Wikipedia:Pineal_gland] | |
Xrefs: |
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Synonyms: |
"corpus pineale" EXACT [] "epiphysis" RELATED [ZFA:0000019] "epiphysis cerebri" RELATED [Wikipedia:Epiphysis_cerebri] "glandula pinealis" EXACT [FMA:TA] "glandula pinealis" EXACT [FMA:62033, FMA:TA] "pineal gland" EXACT [FMA:62033] "pineal organ" EXACT [ZFA:0000019] | |
Comments: | AO notes: part of midbrain in HOG, but this is inconsistent with ABA. | |
Alt_id: | UBERON:FMA_62033-MA_0000175-XAO_0000160 | |
Subset: |
organ_slim uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0002757(regional part of epithalamus),UBERON:0003296(gland of diencephalon),UBERON:0010134(secretory circumventricular organ) |
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part_of: | UBERON:0015238(pineal complex) |
Children
derives from: | FF:0010160 (human pineal gland - adult sample) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10160-103A7 (pineal gland, adult, donor10252)
- 10179-103C8 (pineal gland - adult, donor10196)
- 10377-105G8 (pineal gland, adult, donor10258)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001905 (pineal body), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
Property "Property value" (as page type) with input value "UBPROP:0000001 "A circumscribed swelling, includes the pineal primordium that appears late in the segmentation period in the dorsal midline of the diencephalon. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical structure which is a medial outgrowth of the thalamus on the dorsal surface of the brain. This structure is light sensitive and secretes melatonin when exposed to prolonged darkness.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship loss: part_of pineal complex (TAO:0001359)[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.