EFO:0002091

Name:	biological replicate
Namespace:	FANTOM
Definition:	{{{def}}}
Xrefs:	links: {{{xref}}}:[1]
Synonyms:	{{{synonym}}}
Comments:	{{{comment}}}
Alt_id:	{{{alt_id}}}
Subset:	{{{subset}}}
Created by:	{{{created_by}}}
Creation date:	{{{obo_creation_date}}}
Has quality:	{{{has_quality}}}

Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

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Parents

is_a:	EFO:0000683(replicate)
disjoint_from:	[[{{{disjoint_from}}}]]()
union_of:	[[{{{union_of}}}]]()
derives_from:	[[{{{derives_from}}}]]()
develops_from:	[[{{{develops_from}}}]]()
has_quality:	[[{{{has_quality}}}]]()
located_in:	[[{{{located_in}}}]]()
part_of:	[[{{{part_of}}}]]()

Children

is a:

FF:0000662 (Fibroblast - skin spinal muscular atrophy, cytoplasmic fraction),FF:0000677 (Fibroblast - skin spinal muscular atrophy, whole cell),FF:0011287 (mouse fibroblast cell line: CRL-1658 NIH/3T3 sample),FF:10001-101A3 (Clontech Mouse Universal Reference Total RNA, pool1),FF:10003-101A7 (SABiosciences XpressRef Mouse Universal Total RNA, pool1),FF:10008-101B6 (Universal RNA - Mouse Normal Tissues Biochain, pool1),FF:10010-101C1 (adipose tissue, adult, pool1),FF:10011-101C2 (bladder, adult, pool1),FF:10012-101C3 (brain, adult, pool1),FF:10013-101C4 (cervix, adult, pool1),FF:10014-101C5 (colon, adult, pool1),FF:10015-101C6 (esophagus, adult, pool1),FF:10016-101C7 (heart, adult, pool1),FF:10017-101C8 (kidney, adult, pool1),FF:10018-101C9 (liver, adult, pool1),FF:10019-101D1 (lung, adult, pool1),FF:10020-101D2 (ovary, adult, pool1),FF:10021-101D3 (placenta, adult, pool1),FF:10022-101D4 (prostate, adult, pool1),FF:10023-101D5 (skeletal muscle, adult, pool1),FF:10024-101D6 (small intestine, adult, pool1),FF:10025-101D7 (spleen, adult, pool1),FF:10026-101D8 (testis, adult, pool1),FF:10027-101D9 (thymus, adult, pool1),FF:10028-101E1 (thyroid, adult, pool1),FF:10029-101E2 (trachea, adult, pool1),FF:10030-101E3 (retina, adult, pool1),FF:10031-101E4 (temporal lobe, adult, pool1),FF:10032-101E5 (postcentral gyrus, adult, pool1),FF:10033-101E6 (pons, adult, pool1),FF:10034-101E7 (parietal lobe, adult, pool1),FF:10035-101E8 (paracentral gyrus, adult, pool1),FF:10036-101E9 (occipital pole, adult, pool1),FF:10037-101F1 (nucleus accumbens, adult, pool1),FF:10038-101F2 (medulla oblongata, adult, pool1),FF:10039-101F3 (insula, adult, pool1),FF:10040-101F4 (frontal lobe, adult, pool1),FF:10041-101F5 (dura mater, adult, donor1),FF:10042-101F6 (corpus callosum, adult, pool1),FF:10043-101F7 (thymus, fetal, pool1),FF:10044-101F8 (spleen, fetal, pool1),FF:10045-101F9 (kidney, fetal, pool1),FF:10046-101G1 (heart, fetal, pool1),FF:10047-101G2 (tonsil, adult, pool1),FF:10048-101G3 (smooth muscle, adult, pool1),FF:10049-101G4 (pancreas, adult, donor1),FF:10052-101G7 (aorta, adult, pool1),FF:10053-101G8 (blood, adult, pool1),FF:10054-101G9 (eye, fetal, donor1),FF:10055-101H1 (uterus, fetal, donor1)... further results

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

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Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with EFO:0002091 (biological replicate), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

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No analysis results for this cluster

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