UBERON:0001042
From FANTOM5_SSTAR
| Name: | chordate pharynx | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Funnel-shaped fibromuscular tube that conducts food to the esophagus, and air to the larynyx and lungs. It is located posterior to the NASAL CAVITY; ORAL CAVITY; and LARYNX, and extends from the SKULL BASE to the inferior border of the CRICOID CARTILAGE anteriorly and to the inferior border of the C6 vertebra posteriorly. It is divided into the NASOPHARYNX; OROPHARYNX; and HYPOPHARYNX (laryngopharynx)[MESH]. Swollen region of the anterior foregut, posterior to the mouth and anterior to the liver; its walls form the jaws and gills[ZFA]." [Wikipedia:Pharynx] | ||
| Xrefs: |
| ||
| Synonyms: | "pharynx" BROAD SENSU [FMA:46688] | ||
| Comments: | Note that MA/FMA pharynx not part of digestive/alimentary system, we follow their lead here | ||
| Alt_id: | UBERON:FBbt_00005380-FMA_46688-MA_0000432-MIAA_0000049-WBbt_0003681-ZFA_0000056 | ||
| Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004185(endodermal part of digestive tract),UBERON:0006562(pharynx) |
|---|---|
| develops_from: | UBERON:0009145(pharyngeal region of foregut) |
| part_of: | UBERON:0001004(respiratory system) |
Children
| part of: | UBERON:0001735 (tonsillar ring),UBERON:0003091 (thyroid primordium),UBERON:0003295 (pharyngeal gland),UBERON:0003351 (pharyngeal epithelium),UBERON:0007303 (pharyngeal vasculature),UBERON:0007689 (thyroid diverticulum) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10047-101G2 (tonsil, adult, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001042 (chordate pharynx), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.66e-65 | FFCP PHASE1:Mm9::chr6:41483113..41483131,+#_c4d50d2da7d1661416d1f9177d95c876 | p4@uc009bpa.1 |
| 1.66e-65 | FFCP PHASE2:Mm9::chr6:41483113..41483131,+#_c4d50d2da7d1661416d1f9177d95c876 | p4@uc009bpa.1 |
| 1.86e-64 | FFCP PHASE1:Mm9::chr6:41483037..41483046,+#_135f49ab36bafc91c58d3f133df81e07 | p8@uc009bpa.1 |
| 1.86e-64 | FFCP PHASE2:Mm9::chr6:41483037..41483046,+#_135f49ab36bafc91c58d3f133df81e07 | p8@uc009bpa.1 |
| 8.23e-63 | FFCP PHASE2:Mm9::chr6:41485075..41485096,+#_b8b6459bd8d94d39351f2318a6fae334 | p1@ENSMUST00000103288, p1@uc009bpl.1 |
| 8.23e-63 | FFCP PHASE1:Mm9::chr6:41485075..41485096,+#_b8b6459bd8d94d39351f2318a6fae334 | p1@ENSMUST00000103288, p1@uc009bpl.1 |
| 1.32e-61 | FFCP PHASE2:Mm9::chr6:41491752..41491776,-#_3c4d1a49e33d20cc112e524bc95a1c1f | p@chr6:41491752..41491776, - |
| 1.32e-61 | FFCP PHASE1:Mm9::chr6:41491752..41491776,-#_3c4d1a49e33d20cc112e524bc95a1c1f | p@chr6:41491752..41491776, - |
| 1.32e-61 | FFCP PHASE2:Mm9::chr12:108361918..108361930,-#_3c4d1a49e33d20cc112e524bc95a1c1f | p@chr12:108361918..108361930, - |
| 1.32e-61 | FFCP PHASE1:Mm9::chr12:108361918..108361930,-#_3c4d1a49e33d20cc112e524bc95a1c1f | p@chr12:108361918..108361930, - |
| 2.27e-60 | FFCP PHASE1:Mm9::chr6:41483173..41483188,+#_08603d53caac2883fa5e88739a888dfb | p2@ENSMUST00000103283 |
| 2.27e-60 | FFCP PHASE2:Mm9::chr6:41483173..41483188,+#_08603d53caac2883fa5e88739a888dfb | p2@ENSMUST00000103283 |
| 2.83e-60 | FFCP PHASE1:Mm9::chr6:41484803..41484826,+#_9412ddfcf46ab0049d55fc7db0a079cd | p1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1 |
| 2.83e-60 | FFCP PHASE2:Mm9::chr6:41484803..41484826,+#_9412ddfcf46ab0049d55fc7db0a079cd | p1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1 |
| 1.1e-59 | FFCP PHASE1:Hg19::chr11:94587086..94587097,+#_f26d6eddd2af40ee5aecb645f350bd91 | p19@AMOTL1 |
| 1.1e-59 | FFCP PHASE2:Hg19::chr21:42749543..42749555,+#_f26d6eddd2af40ee5aecb645f350bd91 | p@chr21:42749543..42749555, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr14:22928012..22928031,+#_f26d6eddd2af40ee5aecb645f350bd91 | p3@uc001wea.3, p3@uc010ajt.2, p3@uc010aju.1 |
| 1.1e-59 | FFCP PHASE2:Hg19::chr11:94587086..94587097,+#_f26d6eddd2af40ee5aecb645f350bd91 | p19@AMOTL1 |
| 1.1e-59 | FFCP PHASE1:Hg19::chr21:42749543..42749555,+#_f26d6eddd2af40ee5aecb645f350bd91 | p@chr21:42749543..42749555, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr14:22928012..22928031,+#_f26d6eddd2af40ee5aecb645f350bd91 | p3@uc001wea.3, p3@uc010ajt.2, p3@uc010aju.1 |
| 3.96e-59 | FFCP PHASE2:Mm9::chr9:44807434..44807445,-#_b4f10ca10776f72222afc15c55e5fbd1 | p@chr9:44807434..44807445, - |
| 3.96e-59 | FFCP PHASE1:Mm9::chr9:44807434..44807445,-#_b4f10ca10776f72222afc15c55e5fbd1 | p@chr9:44807434..44807445, - |
| 4.91e-59 | FFCP PHASE2:Mm9::chr6:41494001..41494028,+#_f9e198e6c1a642325db43a6c5bbbf3bb | p@chr6:41494001..41494028, + |
| 4.91e-59 | FFCP PHASE1:Mm9::chr6:41494001..41494028,+#_f9e198e6c1a642325db43a6c5bbbf3bb | p@chr6:41494001..41494028, + |
| 1.18e-58 | FFCP PHASE1:Mm9::chr9:44809185..44809215,-#_5f42aea16f6ce73b4ed57e1935d78c7b | p@chr9:44809185..44809215, - |
| 1.18e-58 | FFCP PHASE2:Mm9::chr9:44809185..44809215,-#_5f42aea16f6ce73b4ed57e1935d78c7b | p@chr9:44809185..44809215, - |
| 1.22e-58 | FFCP PHASE2:Mm9::chr2:11093788..11093799,+#_f9829d4b7f9a271e4f5a5d70e1b2fe39 | p11@Prkcq |
| 1.22e-58 | FFCP PHASE1:Mm9::chr2:11093788..11093799,+#_f9829d4b7f9a271e4f5a5d70e1b2fe39 | p11@Prkcq |
| 3.55e-58 | FFCP PHASE1:Mm9::chr14:54791784..54791787,+#_f254249be96d1b9cf5c8f23afa4f4a75 | p@chr14:54791784..54791787, + |
| 3.55e-58 | FFCP PHASE2:Mm9::chr14:54791784..54791787,+#_f254249be96d1b9cf5c8f23afa4f4a75 | p@chr14:54791784..54791787, + |
| 6.17e-58 | FFCP PHASE2:Mm9::chr6:40997465..40997489,+#_d862028b2d68c5cdcaf4d93f09832ebe | p1@ENSMUST00000103263 |
| 6.17e-58 | FFCP PHASE1:Mm9::chr6:40997465..40997489,+#_d862028b2d68c5cdcaf4d93f09832ebe | p1@ENSMUST00000103263 |
| 1.17e-57 | FFCP PHASE2:Mm9::chr10:28388454..28388458,+#_4d36f30d9063627ddc669ab84b7e1a44 | p5@Themis |
| 1.17e-57 | FFCP PHASE1:Mm9::chr10:28388454..28388458,+#_4d36f30d9063627ddc669ab84b7e1a44 | p5@Themis |
| 1.36e-57 | FFCP PHASE2:Mm9::chr6:41482920..41482933,+#_d4fdad9767c7b8194094dff8cfd02f2b | p5@uc009bpa.1 |
| 1.36e-57 | FFCP PHASE1:Mm9::chr6:41482920..41482933,+#_d4fdad9767c7b8194094dff8cfd02f2b | p5@uc009bpa.1 |
| 1.46e-57 | FFCP PHASE1:Mm9::chr9:44793518..44793537,+#_4bb34ca5803b4277fdbdb064779566e7 | p@chr9:44793518..44793537, + |
| 1.46e-57 | FFCP PHASE2:Mm9::chr9:44793518..44793537,+#_4bb34ca5803b4277fdbdb064779566e7 | p@chr9:44793518..44793537, + |
| 1.87e-57 | FFCP PHASE1:Mm9::chr6:41071548..41071565,+#_d3324331fd0708b8a12123a17ee5127c | p@chr6:41071548..41071565, + |
| 1.87e-57 | FFCP PHASE2:Mm9::chr6:41071548..41071565,+#_d3324331fd0708b8a12123a17ee5127c | p@chr6:41071548..41071565, + |
| 3.74e-57 | FFCP PHASE2:Mm9::chr6:40997323..40997349,+#_05db54c67cac154f671866de95875abb | p2@uc009bnp.1, p2@uc012eki.1 |
| 3.74e-57 | FFCP PHASE1:Mm9::chr6:40997323..40997349,+#_05db54c67cac154f671866de95875abb | p2@uc009bnp.1, p2@uc012eki.1 |
| 2.11e-56 | FFCP PHASE1:Mm9::chr11:52095797..52095809,-#_4739c7f8658ff6411b8558c94ec589de | p5@Tcf7 |
| 2.11e-56 | FFCP PHASE2:Mm9::chr11:52095797..52095809,-#_4739c7f8658ff6411b8558c94ec589de | p5@Tcf7 |
| 7.76e-56 | FFCP PHASE2:Mm9::chr14:61328148..61328173,+#_f0f14e0673f6578a800285642d65731e | p@chr14:61328148..61328173, + |
| 7.76e-56 | FFCP PHASE1:Mm9::chr14:61328148..61328173,+#_f0f14e0673f6578a800285642d65731e | p@chr14:61328148..61328173, + |
| 1.22e-55 | FFCP PHASE2:Mm9::chr6:41483016..41483036,+#_5d5751d4a944dbc9cf25c678f0fcb5e7 | p2@uc009bpa.1 |
| 1.22e-55 | FFCP PHASE1:Mm9::chr6:41483016..41483036,+#_5d5751d4a944dbc9cf25c678f0fcb5e7 | p2@uc009bpa.1 |
| 1.4e-55 | FFCP PHASE1:Mm9::chrX:39855684..39855699,+#_40ede296d6836b19f32afe2621c00dc7 | p2@Sh2d1a |
| 1.4e-55 | FFCP PHASE2:Mm9::chrX:39855684..39855699,+#_40ede296d6836b19f32afe2621c00dc7 | p2@Sh2d1a |
| 2.37e-55 | FFCP PHASE2:Mm9::chr6:41128981..41128995,+#_06b641776d379cfde251210f5e054f84 | p1@uc012ekr.1 |
| 2.37e-55 | FFCP PHASE1:Mm9::chr6:41128981..41128995,+#_06b641776d379cfde251210f5e054f84 | p1@uc012ekr.1 |
| 2.97e-55 | FFCP PHASE2:Mm9::chr6:40841675..40841691,+#_6dd767833e9c81d8142dd8ead9683159 | p2@1810009J06Rik |
| 2.97e-55 | FFCP PHASE1:Mm9::chr6:40841675..40841691,+#_6dd767833e9c81d8142dd8ead9683159 | p2@1810009J06Rik |
| 4.31e-55 | FFCP PHASE2:Mm9::chr6:41066036..41066054,+#_995aff3d8af16125611e1d2089fc90fc | p1@uc012ekk.1 |
| 4.31e-55 | FFCP PHASE1:Mm9::chr6:41066036..41066054,+#_995aff3d8af16125611e1d2089fc90fc | p1@uc012ekk.1 |
| 5.01e-55 | FFCP PHASE1:Mm9::chr6:41009432..41009454,+#_a3d38750e2f4da0318f4f81378e63eff | p1@ENSMUST00000103265 |
| 5.01e-55 | FFCP PHASE2:Mm9::chr6:41009432..41009454,+#_a3d38750e2f4da0318f4f81378e63eff | p1@ENSMUST00000103265 |
| 5.01e-55 | FFCP PHASE2:Mm9::chr6:41491943..41491953,+#_a3d38750e2f4da0318f4f81378e63eff | p3@uc009bpo.1, p3@uc009bpp.1 |
| 5.01e-55 | FFCP PHASE1:Mm9::chr6:41491943..41491953,+#_a3d38750e2f4da0318f4f81378e63eff | p3@uc009bpo.1, p3@uc009bpp.1 |
| 1.07e-54 | FFCP PHASE2:Mm9::chr7:133512043..133512060,-#_e7d762abfd491b15c1a4f54990286cc2 | p@chr7:133512043..133512060, - |
| 1.07e-54 | FFCP PHASE1:Mm9::chr7:133512043..133512060,-#_e7d762abfd491b15c1a4f54990286cc2 | p@chr7:133512043..133512060, - |
| 1.32e-54 | FFCP PHASE2:Mm9::chr6:41128837..41128859,+#_55ad18d03123d17b4decf7a403109b51 | p2@Gm5409 |
| 1.32e-54 | FFCP PHASE1:Mm9::chr6:41128837..41128859,+#_55ad18d03123d17b4decf7a403109b51 | p2@Gm5409 |
| 2.0e-54 | FFCP PHASE2:Mm9::chr16:48772258..48772270,-#_bda13a973a1ecf23d16474baab51c0d5 | p5@Trat1 |
| 2.0e-54 | FFCP PHASE1:Mm9::chr16:48772258..48772270,-#_bda13a973a1ecf23d16474baab51c0d5 | p5@Trat1 |
| 2.2e-54 | FFCP PHASE2:Mm9::chr16:48772215..48772256,-#_8434d6ee295eea6062f00845b479e96e | p4@Trat1 |
| 2.2e-54 | FFCP PHASE1:Mm9::chr16:48772215..48772256,-#_8434d6ee295eea6062f00845b479e96e | p4@Trat1 |
| 2.23e-54 | FFCP PHASE1:Mm9::chr6:41489240..41489252,+#_a96b1046f2bfdc80df2cbacbb3bd8453 | p@chr6:41489240..41489252, + |
| 2.23e-54 | FFCP PHASE2:Mm9::chr6:41489240..41489252,+#_a96b1046f2bfdc80df2cbacbb3bd8453 | p@chr6:41489240..41489252, + |
| 4.16e-54 | FFCP PHASE2:Mm9::chr6:41484314..41484337,+#_7443a76eef573cdb76853213c669653a | p1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1 |
| 4.16e-54 | FFCP PHASE1:Mm9::chr6:41484314..41484337,+#_7443a76eef573cdb76853213c669653a | p1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1 |
| 4.37e-54 | FFCP PHASE1:Mm9::chr6:41231266..41231303,+#_49385a155f4c2c6953c0c9dc7496fd6f | p1@ENSMUST00000103282 |
| 4.37e-54 | FFCP PHASE2:Mm9::chr6:41231266..41231303,+#_49385a155f4c2c6953c0c9dc7496fd6f | p1@ENSMUST00000103282 |
| 4.37e-54 | FFCP PHASE2:Mm9::chr6:41494376..41494389,-#_49385a155f4c2c6953c0c9dc7496fd6f | p@chr6:41494376..41494389, - |
| 4.37e-54 | FFCP PHASE1:Mm9::chr6:41494376..41494389,-#_49385a155f4c2c6953c0c9dc7496fd6f | p@chr6:41494376..41494389, - |
| 5.42e-54 | FFCP PHASE1:Mm9::chr6:41493801..41493826,+#_310240c574b248a6ad0efe6e13807076 | p1@ENSMUST00000103298, p1@uc009bpy.1 |
| 5.42e-54 | FFCP PHASE2:Mm9::chr6:41493801..41493826,+#_310240c574b248a6ad0efe6e13807076 | p1@ENSMUST00000103298, p1@uc009bpy.1 |
| 5.43e-54 | FFCP PHASE2:Mm9::chr14:54794540..54794554,+#_ed3d62b352f123d2f2020ecf42b95643 | p@chr14:54794540..54794554, + |
| 5.43e-54 | FFCP PHASE1:Mm9::chr14:54794540..54794554,+#_ed3d62b352f123d2f2020ecf42b95643 | p@chr14:54794540..54794554, + |
| 5.9e-54 | FFCP PHASE2:Mm9::chr6:41491801..41491815,-#_d4228420290475538408984bdc590aed | p@chr6:41491801..41491815, - |
| 5.9e-54 | FFCP PHASE2:Mm9::chr14:54496363..54496388,+#_d4228420290475538408984bdc590aed | p@chr14:54496363..54496388, + |
| 5.9e-54 | FFCP PHASE1:Mm9::chr14:54496363..54496388,+#_d4228420290475538408984bdc590aed | p@chr14:54496363..54496388, + |
| 5.9e-54 | FFCP PHASE1:Mm9::chr6:41491801..41491815,-#_d4228420290475538408984bdc590aed | p@chr6:41491801..41491815, - |
| 6.18e-54 | FFCP PHASE2:Mm9::chr6:41492643..41492662,+#_88162ced3b8b10704554089f84c69b74 | p@chr6:41492643..41492662, + |
| 6.18e-54 | FFCP PHASE1:Mm9::chr6:41492643..41492662,+#_88162ced3b8b10704554089f84c69b74 | p@chr6:41492643..41492662, + |
| 6.96e-54 | FFCP PHASE2:Mm9::chr11:53448200..53448205,-#_56825d36bc2c475e9045661b7b1b1ccb | p1@Il13 |
| 6.96e-54 | FFCP PHASE1:Mm9::chr11:53448200..53448205,-#_56825d36bc2c475e9045661b7b1b1ccb | p1@Il13 |
| 7.53e-54 | FFCP PHASE1:Mm9::chr6:41492605..41492621,+#_86d7d923c2a80f197518cbc7cc2e2952 | p@chr6:41492605..41492621, + |
| 7.53e-54 | FFCP PHASE2:Mm9::chr6:41492605..41492621,+#_86d7d923c2a80f197518cbc7cc2e2952 | p@chr6:41492605..41492621, + |
| 7.54e-54 | FFCP PHASE2:Mm9::chr7:133512914..133512925,-#_7d64722ac749d9b9796f6a17c4bd12dd | p7@Lat |
| 7.54e-54 | FFCP PHASE1:Mm9::chr7:133512914..133512925,-#_7d64722ac749d9b9796f6a17c4bd12dd | p7@Lat |
| 8.18e-54 | FFCP PHASE1:Mm9::chr6:41138311..41138333,+#_cedcee4ff413238f7801bb865b7680c6 | p@chr6:41138311..41138333, + |
| 8.18e-54 | FFCP PHASE2:Mm9::chr6:41138311..41138333,+#_cedcee4ff413238f7801bb865b7680c6 | p@chr6:41138311..41138333, + |
| 1.05e-53 | FFCP PHASE2:Mm9::chr6:40996879..40996890,+#_58aedc21f016918a8535a44584c1a9f3 | p5@uc009bnp.1, p5@uc012eki.1 |
| 1.05e-53 | FFCP PHASE1:Mm9::chr6:40996879..40996890,+#_58aedc21f016918a8535a44584c1a9f3 | p5@uc009bnp.1, p5@uc012eki.1 |
| 1.16e-53 | FFCP PHASE1:Mm9::chr4:125978325..125978339,-#_d40ff2318ed1f1b8d658789bb1924fa6 | p@chr4:125978325..125978339, - |
| 1.16e-53 | FFCP PHASE2:Mm9::chr6:41483146..41483158,+#_d40ff2318ed1f1b8d658789bb1924fa6 | p6@uc009bpa.1 |
| 1.16e-53 | FFCP PHASE2:Mm9::chr7:133512935..133512936,-#_d40ff2318ed1f1b8d658789bb1924fa6 | p8@Lat |
| 1.16e-53 | FFCP PHASE1:Mm9::chr6:41483146..41483158,+#_d40ff2318ed1f1b8d658789bb1924fa6 | p6@uc009bpa.1 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical cavity bounded by the derivatives of the branchial arches.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Swollen region of the anterior foregut, posterior to the mouth and anterior to the liver; its walls form the jaws and gills. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship type change: part_of_proxy respiratory system (AAO:0000541) CHANGED TO: develops_from respiratory system (UBERON:0001004)[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship type change: part_of_proxy respiratory system (AAO:0000541) CHANGED TO: part_of respiratory system (UBERON:0001004)[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
