UBERON:0001005
From FANTOM5_SSTAR
Name: | respiratory airway | |
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Definition: | "An airway through which respiratory air passes in organisms." [Wikipedia:Trachea] | |
Xrefs: |
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Comments: | This class generically groups trachea and analagous structures throughout metazoa. Consider renaming, as the term could be taken to mean lumen of tracheal system (e.g. in SNOMED) | |
Alt_id: | UBERON:FBbt_00005043-FMA_7394-MA_0000441-MIAA_0000137-XAO_0000118 | |
Subset: |
grouping_class uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0003103(compound organ) |
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part_of: | UBERON:0001004(respiratory system) |
Children
is a: | UBERON:0000065 (respiratory tract),UBERON:0003127 (open tracheal system trachea) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10029-101E2 (trachea, adult, pool1)
- 10058-101H4 (trachea, fetal, donor1)
- 10099-102C9
- 11292-117A5 (Tracheal Epithelial Cells, donor1)
- 11369-118A1 (Tracheal Epithelial Cells, donor2)
- 11441-118I1 (Tracheal Epithelial Cells, donor3)
- 11513-119H1 (Smooth Muscle Cells - Tracheal, donor1)
- 11593-120G9 (Smooth Muscle Cells - Tracheal, donor2)
- 11674-122G9 (Smooth Muscle Cells - Tracheal, donor3)
- 13367-143G1 (Tracheal epithelial cells, differentiation to ciliated epithelial cells)
... further results Mouse (Mus musculus)
- 10029-101E2 (trachea, adult, pool1)
- 10058-101H4 (trachea, fetal, donor1)
- 10099-102C9
- 11292-117A5 (Tracheal Epithelial Cells, donor1)
- 11369-118A1 (Tracheal Epithelial Cells, donor2)
- 11441-118I1 (Tracheal Epithelial Cells, donor3)
- 11513-119H1 (Smooth Muscle Cells - Tracheal, donor1)
- 11593-120G9 (Smooth Muscle Cells - Tracheal, donor2)
- 11674-122G9 (Smooth Muscle Cells - Tracheal, donor3)
- 13367-143G1 (Tracheal epithelial cells, differentiation to ciliated epithelial cells)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001005 (respiratory airway), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data