Personal tools

UBERON:0001042

From FANTOM5_SSTAR

Revision as of 10:54, 24 February 2012 by Autoedit (talk | contribs) (Created page with "{{UBERON |id=UBERON:0001042 |name=chordate pharynx |namespace= |def="Funnel-shaped fibromuscular tube that conducts food to the esophagus, and air to the larynyx and lungs...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Name:chordate pharynx
Definition:"Funnel-shaped fibromuscular tube that conducts food to the esophagus, and air to the larynyx and lungs. It is located posterior to the NASAL CAVITY; ORAL CAVITY; and LARYNX, and extends from the SKULL BASE to the inferior border of the CRICOID CARTILAGE anteriorly and to the inferior border of the C6 vertebra posteriorly. It is divided into the NASOPHARYNX; OROPHARYNX; and HYPOPHARYNX (laryngopharynx)[MESH]. Swollen region of the anterior foregut, posterior to the mouth and anterior to the liver; its walls form the jaws and gills[ZFA]." [Wikipedia:Pharynx]
Xrefs:
links:

AAO:0000967
BTO:0001049
EFO:0000836
EHDAA:2947
EHDAA2:0001458
EMAPA:16706
EMAPA:18838
EV:0100065
FMA:46688
GAID:155
galen:Pharynx
MA:0000432
MESH:A.03.867
ncithesaurus:Pharynx
OpenCyc:Mx4rvViv7ZwpEbGdrcN5Y29ycA
TAO:0000056
VHOG:0000462
XAO:0003227

ZFA:0000056
Synonyms: "pharynx" BROAD SENSU [FMA:46688]
Comments:Note that MA/FMA pharynx not part of digestive/alimentary system, we follow their lead here
Alt_id: UBERON:FBbt_00005380-FMA_46688-MA_0000432-MIAA_0000049-WBbt_0003681-ZFA_0000056
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000077(mixed endoderm/mesoderm-derived structure),UBERON:0006562(pharynx)
develops_from:UBERON:0009145(pharyngeal region of foregut)
part_of:UBERON:0001004(respiratory system)



Children

part of:UBERON:0001735 (tonsillar ring),UBERON:0003091 (thyroid primordium),UBERON:0003295 (pharyngeal gland),UBERON:0003351 (pharyngeal epithelium),UBERON:0007303 (pharyngeal vasculature),UBERON:0007689 (thyroid diverticulum)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001042 (chordate pharynx), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.66e-65FFCP PHASE1:Mm9::chr6:41483113..41483131,+#_c4d50d2da7d1661416d1f9177d95c876p4@uc009bpa.1
1.66e-65FFCP PHASE2:Mm9::chr6:41483113..41483131,+#_c4d50d2da7d1661416d1f9177d95c876p4@uc009bpa.1
1.86e-64FFCP PHASE1:Mm9::chr6:41483037..41483046,+#_135f49ab36bafc91c58d3f133df81e07p8@uc009bpa.1
1.86e-64FFCP PHASE2:Mm9::chr6:41483037..41483046,+#_135f49ab36bafc91c58d3f133df81e07p8@uc009bpa.1
8.23e-63FFCP PHASE2:Mm9::chr6:41485075..41485096,+#_b8b6459bd8d94d39351f2318a6fae334p1@ENSMUST00000103288, p1@uc009bpl.1
8.23e-63FFCP PHASE1:Mm9::chr6:41485075..41485096,+#_b8b6459bd8d94d39351f2318a6fae334p1@ENSMUST00000103288, p1@uc009bpl.1
1.32e-61FFCP PHASE2:Mm9::chr6:41491752..41491776,-#_3c4d1a49e33d20cc112e524bc95a1c1fp@chr6:41491752..41491776, -
1.32e-61FFCP PHASE1:Mm9::chr6:41491752..41491776,-#_3c4d1a49e33d20cc112e524bc95a1c1fp@chr6:41491752..41491776, -
1.32e-61FFCP PHASE2:Mm9::chr12:108361918..108361930,-#_3c4d1a49e33d20cc112e524bc95a1c1fp@chr12:108361918..108361930, -
1.32e-61FFCP PHASE1:Mm9::chr12:108361918..108361930,-#_3c4d1a49e33d20cc112e524bc95a1c1fp@chr12:108361918..108361930, -
2.27e-60FFCP PHASE1:Mm9::chr6:41483173..41483188,+#_08603d53caac2883fa5e88739a888dfbp2@ENSMUST00000103283
2.27e-60FFCP PHASE2:Mm9::chr6:41483173..41483188,+#_08603d53caac2883fa5e88739a888dfbp2@ENSMUST00000103283
2.83e-60FFCP PHASE1:Mm9::chr6:41484803..41484826,+#_9412ddfcf46ab0049d55fc7db0a079cdp1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1
2.83e-60FFCP PHASE2:Mm9::chr6:41484803..41484826,+#_9412ddfcf46ab0049d55fc7db0a079cdp1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1
1.1e-59FFCP PHASE1:Hg19::chr11:94587086..94587097,+#_f26d6eddd2af40ee5aecb645f350bd91p19@AMOTL1
1.1e-59FFCP PHASE2:Hg19::chr21:42749543..42749555,+#_f26d6eddd2af40ee5aecb645f350bd91p@chr21:42749543..42749555, +
1.1e-59FFCP PHASE2:Hg19::chr14:22928012..22928031,+#_f26d6eddd2af40ee5aecb645f350bd91p3@uc001wea.3, p3@uc010ajt.2, p3@uc010aju.1
1.1e-59FFCP PHASE2:Hg19::chr11:94587086..94587097,+#_f26d6eddd2af40ee5aecb645f350bd91p19@AMOTL1
1.1e-59FFCP PHASE1:Hg19::chr21:42749543..42749555,+#_f26d6eddd2af40ee5aecb645f350bd91p@chr21:42749543..42749555, +
1.1e-59FFCP PHASE1:Hg19::chr14:22928012..22928031,+#_f26d6eddd2af40ee5aecb645f350bd91p3@uc001wea.3, p3@uc010ajt.2, p3@uc010aju.1
3.96e-59FFCP PHASE2:Mm9::chr9:44807434..44807445,-#_b4f10ca10776f72222afc15c55e5fbd1p@chr9:44807434..44807445, -
3.96e-59FFCP PHASE1:Mm9::chr9:44807434..44807445,-#_b4f10ca10776f72222afc15c55e5fbd1p@chr9:44807434..44807445, -
4.91e-59FFCP PHASE2:Mm9::chr6:41494001..41494028,+#_f9e198e6c1a642325db43a6c5bbbf3bbp@chr6:41494001..41494028, +
4.91e-59FFCP PHASE1:Mm9::chr6:41494001..41494028,+#_f9e198e6c1a642325db43a6c5bbbf3bbp@chr6:41494001..41494028, +
1.18e-58FFCP PHASE1:Mm9::chr9:44809185..44809215,-#_5f42aea16f6ce73b4ed57e1935d78c7bp@chr9:44809185..44809215, -
1.18e-58FFCP PHASE2:Mm9::chr9:44809185..44809215,-#_5f42aea16f6ce73b4ed57e1935d78c7bp@chr9:44809185..44809215, -
1.22e-58FFCP PHASE2:Mm9::chr2:11093788..11093799,+#_f9829d4b7f9a271e4f5a5d70e1b2fe39p11@Prkcq
1.22e-58FFCP PHASE1:Mm9::chr2:11093788..11093799,+#_f9829d4b7f9a271e4f5a5d70e1b2fe39p11@Prkcq
3.55e-58FFCP PHASE1:Mm9::chr14:54791784..54791787,+#_f254249be96d1b9cf5c8f23afa4f4a75p@chr14:54791784..54791787, +
3.55e-58FFCP PHASE2:Mm9::chr14:54791784..54791787,+#_f254249be96d1b9cf5c8f23afa4f4a75p@chr14:54791784..54791787, +
6.17e-58FFCP PHASE2:Mm9::chr6:40997465..40997489,+#_d862028b2d68c5cdcaf4d93f09832ebep1@ENSMUST00000103263
6.17e-58FFCP PHASE1:Mm9::chr6:40997465..40997489,+#_d862028b2d68c5cdcaf4d93f09832ebep1@ENSMUST00000103263
1.17e-57FFCP PHASE2:Mm9::chr10:28388454..28388458,+#_4d36f30d9063627ddc669ab84b7e1a44p5@Themis
1.17e-57FFCP PHASE1:Mm9::chr10:28388454..28388458,+#_4d36f30d9063627ddc669ab84b7e1a44p5@Themis
1.36e-57FFCP PHASE2:Mm9::chr6:41482920..41482933,+#_d4fdad9767c7b8194094dff8cfd02f2bp5@uc009bpa.1
1.36e-57FFCP PHASE1:Mm9::chr6:41482920..41482933,+#_d4fdad9767c7b8194094dff8cfd02f2bp5@uc009bpa.1
1.46e-57FFCP PHASE1:Mm9::chr9:44793518..44793537,+#_4bb34ca5803b4277fdbdb064779566e7p@chr9:44793518..44793537, +
1.46e-57FFCP PHASE2:Mm9::chr9:44793518..44793537,+#_4bb34ca5803b4277fdbdb064779566e7p@chr9:44793518..44793537, +
1.87e-57FFCP PHASE1:Mm9::chr6:41071548..41071565,+#_d3324331fd0708b8a12123a17ee5127cp@chr6:41071548..41071565, +
1.87e-57FFCP PHASE2:Mm9::chr6:41071548..41071565,+#_d3324331fd0708b8a12123a17ee5127cp@chr6:41071548..41071565, +
3.74e-57FFCP PHASE2:Mm9::chr6:40997323..40997349,+#_05db54c67cac154f671866de95875abbp2@uc009bnp.1, p2@uc012eki.1
3.74e-57FFCP PHASE1:Mm9::chr6:40997323..40997349,+#_05db54c67cac154f671866de95875abbp2@uc009bnp.1, p2@uc012eki.1
2.11e-56FFCP PHASE1:Mm9::chr11:52095797..52095809,-#_4739c7f8658ff6411b8558c94ec589dep5@Tcf7
2.11e-56FFCP PHASE2:Mm9::chr11:52095797..52095809,-#_4739c7f8658ff6411b8558c94ec589dep5@Tcf7
7.76e-56FFCP PHASE2:Mm9::chr14:61328148..61328173,+#_f0f14e0673f6578a800285642d65731ep@chr14:61328148..61328173, +
7.76e-56FFCP PHASE1:Mm9::chr14:61328148..61328173,+#_f0f14e0673f6578a800285642d65731ep@chr14:61328148..61328173, +
1.22e-55FFCP PHASE2:Mm9::chr6:41483016..41483036,+#_5d5751d4a944dbc9cf25c678f0fcb5e7p2@uc009bpa.1
1.22e-55FFCP PHASE1:Mm9::chr6:41483016..41483036,+#_5d5751d4a944dbc9cf25c678f0fcb5e7p2@uc009bpa.1
1.4e-55FFCP PHASE1:Mm9::chrX:39855684..39855699,+#_40ede296d6836b19f32afe2621c00dc7p2@Sh2d1a
1.4e-55FFCP PHASE2:Mm9::chrX:39855684..39855699,+#_40ede296d6836b19f32afe2621c00dc7p2@Sh2d1a
2.37e-55FFCP PHASE2:Mm9::chr6:41128981..41128995,+#_06b641776d379cfde251210f5e054f84p1@uc012ekr.1
2.37e-55FFCP PHASE1:Mm9::chr6:41128981..41128995,+#_06b641776d379cfde251210f5e054f84p1@uc012ekr.1
2.97e-55FFCP PHASE2:Mm9::chr6:40841675..40841691,+#_6dd767833e9c81d8142dd8ead9683159p2@1810009J06Rik
2.97e-55FFCP PHASE1:Mm9::chr6:40841675..40841691,+#_6dd767833e9c81d8142dd8ead9683159p2@1810009J06Rik
4.31e-55FFCP PHASE2:Mm9::chr6:41066036..41066054,+#_995aff3d8af16125611e1d2089fc90fcp1@uc012ekk.1
4.31e-55FFCP PHASE1:Mm9::chr6:41066036..41066054,+#_995aff3d8af16125611e1d2089fc90fcp1@uc012ekk.1
5.01e-55FFCP PHASE1:Mm9::chr6:41009432..41009454,+#_a3d38750e2f4da0318f4f81378e63effp1@ENSMUST00000103265
5.01e-55FFCP PHASE2:Mm9::chr6:41009432..41009454,+#_a3d38750e2f4da0318f4f81378e63effp1@ENSMUST00000103265
5.01e-55FFCP PHASE2:Mm9::chr6:41491943..41491953,+#_a3d38750e2f4da0318f4f81378e63effp3@uc009bpo.1, p3@uc009bpp.1
5.01e-55FFCP PHASE1:Mm9::chr6:41491943..41491953,+#_a3d38750e2f4da0318f4f81378e63effp3@uc009bpo.1, p3@uc009bpp.1
1.07e-54FFCP PHASE2:Mm9::chr7:133512043..133512060,-#_e7d762abfd491b15c1a4f54990286cc2p@chr7:133512043..133512060, -
1.07e-54FFCP PHASE1:Mm9::chr7:133512043..133512060,-#_e7d762abfd491b15c1a4f54990286cc2p@chr7:133512043..133512060, -
1.32e-54FFCP PHASE2:Mm9::chr6:41128837..41128859,+#_55ad18d03123d17b4decf7a403109b51p2@Gm5409
1.32e-54FFCP PHASE1:Mm9::chr6:41128837..41128859,+#_55ad18d03123d17b4decf7a403109b51p2@Gm5409
2.0e-54FFCP PHASE2:Mm9::chr16:48772258..48772270,-#_bda13a973a1ecf23d16474baab51c0d5p5@Trat1
2.0e-54FFCP PHASE1:Mm9::chr16:48772258..48772270,-#_bda13a973a1ecf23d16474baab51c0d5p5@Trat1
2.2e-54FFCP PHASE2:Mm9::chr16:48772215..48772256,-#_8434d6ee295eea6062f00845b479e96ep4@Trat1
2.2e-54FFCP PHASE1:Mm9::chr16:48772215..48772256,-#_8434d6ee295eea6062f00845b479e96ep4@Trat1
2.23e-54FFCP PHASE1:Mm9::chr6:41489240..41489252,+#_a96b1046f2bfdc80df2cbacbb3bd8453p@chr6:41489240..41489252, +
2.23e-54FFCP PHASE2:Mm9::chr6:41489240..41489252,+#_a96b1046f2bfdc80df2cbacbb3bd8453p@chr6:41489240..41489252, +
4.16e-54FFCP PHASE2:Mm9::chr6:41484314..41484337,+#_7443a76eef573cdb76853213c669653ap1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1
4.16e-54FFCP PHASE1:Mm9::chr6:41484314..41484337,+#_7443a76eef573cdb76853213c669653ap1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1
4.37e-54FFCP PHASE1:Mm9::chr6:41231266..41231303,+#_49385a155f4c2c6953c0c9dc7496fd6fp1@ENSMUST00000103282
4.37e-54FFCP PHASE2:Mm9::chr6:41231266..41231303,+#_49385a155f4c2c6953c0c9dc7496fd6fp1@ENSMUST00000103282
4.37e-54FFCP PHASE2:Mm9::chr6:41494376..41494389,-#_49385a155f4c2c6953c0c9dc7496fd6fp@chr6:41494376..41494389, -
4.37e-54FFCP PHASE1:Mm9::chr6:41494376..41494389,-#_49385a155f4c2c6953c0c9dc7496fd6fp@chr6:41494376..41494389, -
5.42e-54FFCP PHASE1:Mm9::chr6:41493801..41493826,+#_310240c574b248a6ad0efe6e13807076p1@ENSMUST00000103298, p1@uc009bpy.1
5.42e-54FFCP PHASE2:Mm9::chr6:41493801..41493826,+#_310240c574b248a6ad0efe6e13807076p1@ENSMUST00000103298, p1@uc009bpy.1
5.43e-54FFCP PHASE2:Mm9::chr14:54794540..54794554,+#_ed3d62b352f123d2f2020ecf42b95643p@chr14:54794540..54794554, +
5.43e-54FFCP PHASE1:Mm9::chr14:54794540..54794554,+#_ed3d62b352f123d2f2020ecf42b95643p@chr14:54794540..54794554, +
5.9e-54FFCP PHASE2:Mm9::chr6:41491801..41491815,-#_d4228420290475538408984bdc590aedp@chr6:41491801..41491815, -
5.9e-54FFCP PHASE2:Mm9::chr14:54496363..54496388,+#_d4228420290475538408984bdc590aedp@chr14:54496363..54496388, +
5.9e-54FFCP PHASE1:Mm9::chr14:54496363..54496388,+#_d4228420290475538408984bdc590aedp@chr14:54496363..54496388, +
5.9e-54FFCP PHASE1:Mm9::chr6:41491801..41491815,-#_d4228420290475538408984bdc590aedp@chr6:41491801..41491815, -
6.18e-54FFCP PHASE2:Mm9::chr6:41492643..41492662,+#_88162ced3b8b10704554089f84c69b74p@chr6:41492643..41492662, +
6.18e-54FFCP PHASE1:Mm9::chr6:41492643..41492662,+#_88162ced3b8b10704554089f84c69b74p@chr6:41492643..41492662, +
6.96e-54FFCP PHASE2:Mm9::chr11:53448200..53448205,-#_56825d36bc2c475e9045661b7b1b1ccbp1@Il13
6.96e-54FFCP PHASE1:Mm9::chr11:53448200..53448205,-#_56825d36bc2c475e9045661b7b1b1ccbp1@Il13
7.53e-54FFCP PHASE1:Mm9::chr6:41492605..41492621,+#_86d7d923c2a80f197518cbc7cc2e2952p@chr6:41492605..41492621, +
7.53e-54FFCP PHASE2:Mm9::chr6:41492605..41492621,+#_86d7d923c2a80f197518cbc7cc2e2952p@chr6:41492605..41492621, +
7.54e-54FFCP PHASE2:Mm9::chr7:133512914..133512925,-#_7d64722ac749d9b9796f6a17c4bd12ddp7@Lat
7.54e-54FFCP PHASE1:Mm9::chr7:133512914..133512925,-#_7d64722ac749d9b9796f6a17c4bd12ddp7@Lat
8.18e-54FFCP PHASE1:Mm9::chr6:41138311..41138333,+#_cedcee4ff413238f7801bb865b7680c6p@chr6:41138311..41138333, +
8.18e-54FFCP PHASE2:Mm9::chr6:41138311..41138333,+#_cedcee4ff413238f7801bb865b7680c6p@chr6:41138311..41138333, +
1.05e-53FFCP PHASE2:Mm9::chr6:40996879..40996890,+#_58aedc21f016918a8535a44584c1a9f3p5@uc009bnp.1, p5@uc012eki.1
1.05e-53FFCP PHASE1:Mm9::chr6:40996879..40996890,+#_58aedc21f016918a8535a44584c1a9f3p5@uc009bnp.1, p5@uc012eki.1
1.16e-53FFCP PHASE1:Mm9::chr4:125978325..125978339,-#_d40ff2318ed1f1b8d658789bb1924fa6p@chr4:125978325..125978339, -
1.16e-53FFCP PHASE2:Mm9::chr6:41483146..41483158,+#_d40ff2318ed1f1b8d658789bb1924fa6p6@uc009bpa.1
1.16e-53FFCP PHASE2:Mm9::chr7:133512935..133512936,-#_d40ff2318ed1f1b8d658789bb1924fa6p8@Lat
1.16e-53FFCP PHASE1:Mm9::chr6:41483146..41483158,+#_d40ff2318ed1f1b8d658789bb1924fa6p6@uc009bpa.1

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0001042&oldid=414599"