Personal tools

UBERON:0003887

From FANTOM5_SSTAR

Revision as of 11:10, 24 February 2012 by Autoedit (talk | contribs) (Created page with "{{UBERON |id=UBERON:0003887 |name=intraembryonic coelom |namespace= |def="In the development of the human embryo the intraembryonic coelom (or somatic coelom) is a portion...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Name:intraembryonic coelom
Definition:"In the development of the human embryo the intraembryonic coelom (or somatic coelom) is a portion of the conceptus forming in the mesoderm. During the second week of development, the lateral mesoderm splits into a dorsal somatic mesoderm (somatopleure) and a ventral splanchnic mesoderm (splanchnopleure). The resulting cavity between the somatopleure and splanchnopleure is called the intraembryonic coelom. This space will give rise to the thoracic and abdominal cavities. It briefly has a connection with the extraembryonic coelom[WP]." [Wikipedia:Intraembryonic_coelom]
Xrefs:
links:

EHDAA:251
EMAPA:16088
ncithesaurus:Intraembryonic_Coelom

VHOG:0000316
Synonyms: "somatic coelom" EXACT [Wikipedia:Intraembryonic_coelom]
Comments:TODO - add spatial relationships to halves of LPM. Note the OG places XAO and ZFA coelem terms here. Todo: check ZFA, which appears to be a structure present in adults

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003886(body cavity precursor)
develops_from:UBERON:0003081(lateral plate mesoderm)



Children

develops from:UBERON:0001179 (peritoneal cavity)
part of:UBERON:0002120 (pronephros)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003887 (intraembryonic coelom), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.61e-53FFCP PHASE2:Hg19::chr7:4051097..4051112,+#_4c6da0d1970fea77a9a8ec2fc9af5054p@chr7:4051097..4051112, +
4.61e-53FFCP PHASE1:Hg19::chr7:4051097..4051112,+#_4c6da0d1970fea77a9a8ec2fc9af5054p@chr7:4051097..4051112, +
2.77e-52FFCP PHASE1:Mm9::chr19:45161527..45161539,+#_b87fcab46e1cb142f46b45acc893805cp@chr19:45161527..45161539, +
2.77e-52FFCP PHASE2:Mm9::chr19:45161527..45161539,+#_b87fcab46e1cb142f46b45acc893805cp@chr19:45161527..45161539, +
5.59e-50FFCP PHASE2:Hg19::chr10:15416548..15416557,-#_40bf3d3fd199b0acbbbcb42a4a642d23p@chr10:15416548..15416557, -
5.59e-50FFCP PHASE1:Hg19::chr10:15416548..15416557,-#_40bf3d3fd199b0acbbbcb42a4a642d23p@chr10:15416548..15416557, -
4.52e-45FFCP PHASE1:Mm9::chr19:45224323..45224368,+#_ea32bbb458ce86879e2f65a95e1c2d2bp@chr19:45224323..45224368, +
4.52e-45FFCP PHASE2:Mm9::chr19:45224323..45224368,+#_ea32bbb458ce86879e2f65a95e1c2d2bp@chr19:45224323..45224368, +
3.17e-44FFCP PHASE2:Hg19::chrX:11284012..11284023,-#_00ad8b217146d8ec8722a81f76d5844fp16@ARHGAP6
3.17e-44FFCP PHASE1:Hg19::chrX:11284012..11284023,-#_00ad8b217146d8ec8722a81f76d5844fp16@ARHGAP6
8.43e-44FFCP PHASE2:Mm9::chr13:108293519..108293533,-#_b440897647f8ba20565fc644bc93c417p@chr13:108293519..108293533, -
8.43e-44FFCP PHASE1:Mm9::chr13:108293519..108293533,-#_b440897647f8ba20565fc644bc93c417p@chr13:108293519..108293533, -
1.59e-39FFCP PHASE2:Mm9::chr19:42116119..42116133,+#_ea6ab282312baa629790e643fc868e6cp@chr19:42116119..42116133, +
1.59e-39FFCP PHASE1:Mm9::chr19:42116119..42116133,+#_ea6ab282312baa629790e643fc868e6cp@chr19:42116119..42116133, +
8.61e-38FFCP PHASE2:Hg19::chr17:72313399..72313408,-#_2a89a65bd570b3cb0b949c7c4ed90a45p@chr17:72313399..72313408, -
8.61e-38FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_2a89a65bd570b3cb0b949c7c4ed90a45p@chr2:120409486..120409492, +
8.61e-38FFCP PHASE1:Hg19::chr17:72313399..72313408,-#_2a89a65bd570b3cb0b949c7c4ed90a45p@chr17:72313399..72313408, -
8.61e-38FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_2a89a65bd570b3cb0b949c7c4ed90a45p@chr2:120409486..120409492, +
9.76e-38FFCP PHASE2:Hg19::chr1:32042590..32042605,+#_bb0c76046a199586dcbd17da76c5bb37p24@TINAGL1
9.76e-38FFCP PHASE1:Hg19::chr1:32042590..32042605,+#_bb0c76046a199586dcbd17da76c5bb37p24@TINAGL1
5.98e-34FFCP PHASE2:Hg19::chr11:925449..925458,+#_65704eaef37b23c8078e41c91b5804d0p17@AP2A2
5.98e-34FFCP PHASE2:Hg19::chr1:157811772..157811796,-#_65704eaef37b23c8078e41c91b5804d0p7@CD5L
5.98e-34FFCP PHASE1:Hg19::chr9:127269462..127269484,-#_65704eaef37b23c8078e41c91b5804d0p2@NR5A1
5.98e-34FFCP PHASE2:Hg19::chr15:95561320..95561328,-#_65704eaef37b23c8078e41c91b5804d0p@chr15:95561320..95561328, -
5.98e-34FFCP PHASE2:Hg19::chr11:56859584..56859589,-#_65704eaef37b23c8078e41c91b5804d0p@chr11:56859584..56859589, -
5.98e-34FFCP PHASE1:Hg19::chr10:102505655..102505689,+#_65704eaef37b23c8078e41c91b5804d0p10@PAX2
5.98e-34FFCP PHASE1:Hg19::chr11:56859693..56859701,-#_65704eaef37b23c8078e41c91b5804d0p@chr11:56859693..56859701, -
5.98e-34FFCP PHASE1:Hg19::chr4:76901930..76901942,+#_65704eaef37b23c8078e41c91b5804d0p1@ENST00000501239
5.98e-34FFCP PHASE2:Hg19::chrX:69645652..69645664,+#_65704eaef37b23c8078e41c91b5804d0p7@GDPD2
5.98e-34FFCP PHASE1:Hg19::chr14:68644730..68644737,+#_65704eaef37b23c8078e41c91b5804d0p@chr14:68644730..68644737, +
5.98e-34FFCP PHASE1:Hg19::chr8:22424743..22424759,-#_65704eaef37b23c8078e41c91b5804d0p1@ENST00000517384
5.98e-34FFCP PHASE2:Hg19::chr8:47834174..47834213,+#_65704eaef37b23c8078e41c91b5804d0p1@ENST00000524012
5.98e-34FFCP PHASE1:Hg19::chr7:22259740..22259751,-#_65704eaef37b23c8078e41c91b5804d0p19@RAPGEF5
5.98e-34FFCP PHASE1:Hg19::chr11:925449..925458,+#_65704eaef37b23c8078e41c91b5804d0p17@AP2A2
5.98e-34FFCP PHASE1:Hg19::chr21:28820941..28820952,-#_65704eaef37b23c8078e41c91b5804d0p2@ENST00000420186, p2@uc002ymh.2
5.98e-34FFCP PHASE1:Hg19::chr11:56859584..56859589,-#_65704eaef37b23c8078e41c91b5804d0p@chr11:56859584..56859589, -
5.98e-34FFCP PHASE2:Hg19::chr6:119812455..119812476,-#_65704eaef37b23c8078e41c91b5804d0p1@uc003pyn.1
5.98e-34FFCP PHASE2:Hg19::chr1:159172187..159172197,-#_65704eaef37b23c8078e41c91b5804d0p1@uc001ftm.1
5.98e-34FFCP PHASE1:Hg19::chr9:133973310..133973321,+#_65704eaef37b23c8078e41c91b5804d0p18@AIF1L
5.98e-34FFCP PHASE1:Hg19::chr17:78171885..78171900,+#_65704eaef37b23c8078e41c91b5804d0p@chr17:78171885..78171900, +
5.98e-34FFCP PHASE1:Hg19::chr16:84218794..84218800,+#_65704eaef37b23c8078e41c91b5804d0p@chr16:84218794..84218800, +
5.98e-34FFCP PHASE1:Hg19::chr9:127269488..127269495,-#_65704eaef37b23c8078e41c91b5804d0p5@NR5A1
5.98e-34FFCP PHASE2:Hg19::chr11:56859603..56859606,-#_65704eaef37b23c8078e41c91b5804d0p@chr11:56859603..56859606, -
5.98e-34FFCP PHASE2:Hg19::chr21:28820892..28820899,-#_65704eaef37b23c8078e41c91b5804d0p4@ENST00000420186, p4@uc002ymh.2
5.98e-34FFCP PHASE1:Hg19::chr6:152639579..152639586,-#_65704eaef37b23c8078e41c91b5804d0p60@SYNE1
5.98e-34FFCP PHASE2:Hg19::chr10:98014908..98014919,-#_65704eaef37b23c8078e41c91b5804d0p@chr10:98014908..98014919, -
5.98e-34FFCP PHASE2:Hg19::chr14:68644730..68644737,+#_65704eaef37b23c8078e41c91b5804d0p@chr14:68644730..68644737, +
5.98e-34FFCP PHASE2:Hg19::chr9:127269434..127269438,-#_65704eaef37b23c8078e41c91b5804d0p8@NR5A1
5.98e-34FFCP PHASE2:Hg19::chr19:32401253..32401271,-#_65704eaef37b23c8078e41c91b5804d0p@chr19:32401253..32401271, -
5.98e-34FFCP PHASE1:Hg19::chr1:172416185..172416189,-#_65704eaef37b23c8078e41c91b5804d0p@chr1:172416185..172416189, -
5.98e-34FFCP PHASE1:Hg19::chr8:22436248..22436259,+#_65704eaef37b23c8078e41c91b5804d0p11@PDLIM2
5.98e-34FFCP PHASE1:Hg19::chr1:28520450..28520453,-#_65704eaef37b23c8078e41c91b5804d0p21@PTAFR
5.98e-34FFCP PHASE2:Hg19::chr9:124516729..124516752,+#_65704eaef37b23c8078e41c91b5804d0p@chr9:124516729..124516752, +
5.98e-34FFCP PHASE1:Hg19::chr21:28820954..28820963,-#_65704eaef37b23c8078e41c91b5804d0p3@ENST00000420186, p3@uc002ymh.2
5.98e-34FFCP PHASE1:Hg19::chr11:56859603..56859606,-#_65704eaef37b23c8078e41c91b5804d0p@chr11:56859603..56859606, -
5.98e-34FFCP PHASE1:Hg19::chr9:79894790..79894797,+#_65704eaef37b23c8078e41c91b5804d0p10@VPS13A
5.98e-34FFCP PHASE2:Hg19::chr8:22424709..22424716,-#_65704eaef37b23c8078e41c91b5804d0p2@ENST00000517384
5.98e-34FFCP PHASE2:Hg19::chr3:31465107..31465133,-#_65704eaef37b23c8078e41c91b5804d0p@chr3:31465107..31465133, -
5.98e-34FFCP PHASE2:Hg19::chr4:76901930..76901942,+#_65704eaef37b23c8078e41c91b5804d0p1@ENST00000501239
5.98e-34FFCP PHASE2:Hg19::chr9:127260615..127260651,-#_65704eaef37b23c8078e41c91b5804d0p@chr9:127260615..127260651, -
5.98e-34FFCP PHASE1:Hg19::chr1:157811772..157811796,-#_65704eaef37b23c8078e41c91b5804d0p7@CD5L
5.98e-34FFCP PHASE1:Hg19::chr10:98014908..98014919,-#_65704eaef37b23c8078e41c91b5804d0p@chr10:98014908..98014919, -
5.98e-34FFCP PHASE2:Hg19::chr11:56859608..56859619,-#_65704eaef37b23c8078e41c91b5804d0p@chr11:56859608..56859619, -
5.98e-34FFCP PHASE2:Hg19::chr21:28820911..28820933,-#_65704eaef37b23c8078e41c91b5804d0p1@ENST00000420186, p1@uc002ymh.2
5.98e-34FFCP PHASE2:Hg19::chr10:98014943..98014960,-#_65704eaef37b23c8078e41c91b5804d0p@chr10:98014943..98014960, -
5.98e-34FFCP PHASE2:Hg19::chr9:127269462..127269484,-#_65704eaef37b23c8078e41c91b5804d0p2@NR5A1
5.98e-34FFCP PHASE1:Hg19::chrX:69645652..69645664,+#_65704eaef37b23c8078e41c91b5804d0p7@GDPD2
5.98e-34FFCP PHASE1:Hg19::chr8:47834174..47834213,+#_65704eaef37b23c8078e41c91b5804d0p1@ENST00000524012
5.98e-34FFCP PHASE1:Hg19::chr11:56859608..56859619,-#_65704eaef37b23c8078e41c91b5804d0p@chr11:56859608..56859619, -
5.98e-34FFCP PHASE1:Hg19::chr6:119812455..119812476,-#_65704eaef37b23c8078e41c91b5804d0p1@uc003pyn.1
5.98e-34FFCP PHASE2:Hg19::chr8:22424743..22424759,-#_65704eaef37b23c8078e41c91b5804d0p1@ENST00000517384
5.98e-34FFCP PHASE1:Hg19::chr1:159172187..159172197,-#_65704eaef37b23c8078e41c91b5804d0p1@uc001ftm.1
5.98e-34FFCP PHASE1:Hg19::chr10:98014943..98014960,-#_65704eaef37b23c8078e41c91b5804d0p@chr10:98014943..98014960, -
5.98e-34FFCP PHASE2:Hg19::chr11:56859638..56859643,-#_65704eaef37b23c8078e41c91b5804d0p@chr11:56859638..56859643, -
5.98e-34FFCP PHASE2:Hg19::chr21:28820941..28820952,-#_65704eaef37b23c8078e41c91b5804d0p2@ENST00000420186, p2@uc002ymh.2
5.98e-34FFCP PHASE2:Hg19::chr7:22259740..22259751,-#_65704eaef37b23c8078e41c91b5804d0p19@RAPGEF5
5.98e-34FFCP PHASE1:Hg19::chr21:28820892..28820899,-#_65704eaef37b23c8078e41c91b5804d0p4@ENST00000420186, p4@uc002ymh.2
5.98e-34FFCP PHASE2:Hg19::chr11:1891326..1891337,-#_65704eaef37b23c8078e41c91b5804d0p@chr11:1891326..1891337, -
5.98e-34FFCP PHASE2:Hg19::chr9:133973310..133973321,+#_65704eaef37b23c8078e41c91b5804d0p18@AIF1L
5.98e-34FFCP PHASE1:Hg19::chr14:75904485..75904519,+#_65704eaef37b23c8078e41c91b5804d0p12@JDP2
5.98e-34FFCP PHASE2:Hg19::chr9:127269488..127269495,-#_65704eaef37b23c8078e41c91b5804d0p5@NR5A1
5.98e-34FFCP PHASE2:Hg19::chr9:79894790..79894797,+#_65704eaef37b23c8078e41c91b5804d0p10@VPS13A
5.98e-34FFCP PHASE2:Hg19::chr6:152639579..152639586,-#_65704eaef37b23c8078e41c91b5804d0p60@SYNE1
5.98e-34FFCP PHASE1:Hg19::chr9:127269434..127269438,-#_65704eaef37b23c8078e41c91b5804d0p8@NR5A1
5.98e-34FFCP PHASE1:Hg19::chr19:32401253..32401271,-#_65704eaef37b23c8078e41c91b5804d0p@chr19:32401253..32401271, -
5.98e-34FFCP PHASE2:Hg19::chr16:84218794..84218800,+#_65704eaef37b23c8078e41c91b5804d0p@chr16:84218794..84218800, +
5.98e-34FFCP PHASE1:Hg19::chr9:124516729..124516752,+#_65704eaef37b23c8078e41c91b5804d0p@chr9:124516729..124516752, +
5.98e-34FFCP PHASE1:Hg19::chr15:95561320..95561328,-#_65704eaef37b23c8078e41c91b5804d0p@chr15:95561320..95561328, -
5.98e-34FFCP PHASE1:Hg19::chr11:56859638..56859643,-#_65704eaef37b23c8078e41c91b5804d0p@chr11:56859638..56859643, -
5.98e-34FFCP PHASE2:Hg19::chr1:172416185..172416189,-#_65704eaef37b23c8078e41c91b5804d0p@chr1:172416185..172416189, -
5.98e-34FFCP PHASE2:Hg19::chr10:102505655..102505689,+#_65704eaef37b23c8078e41c91b5804d0p10@PAX2
5.98e-34FFCP PHASE2:Hg19::chr8:22436248..22436259,+#_65704eaef37b23c8078e41c91b5804d0p11@PDLIM2
5.98e-34FFCP PHASE1:Hg19::chr3:31465107..31465133,-#_65704eaef37b23c8078e41c91b5804d0p@chr3:31465107..31465133, -
5.98e-34FFCP PHASE1:Hg19::chr11:1891326..1891337,-#_65704eaef37b23c8078e41c91b5804d0p@chr11:1891326..1891337, -
5.98e-34FFCP PHASE2:Hg19::chr11:56859693..56859701,-#_65704eaef37b23c8078e41c91b5804d0p@chr11:56859693..56859701, -
5.98e-34FFCP PHASE2:Hg19::chr21:28820954..28820963,-#_65704eaef37b23c8078e41c91b5804d0p3@ENST00000420186, p3@uc002ymh.2
5.98e-34FFCP PHASE1:Hg19::chr8:22424709..22424716,-#_65704eaef37b23c8078e41c91b5804d0p2@ENST00000517384
5.98e-34FFCP PHASE2:Hg19::chr1:28520450..28520453,-#_65704eaef37b23c8078e41c91b5804d0p21@PTAFR
5.98e-34FFCP PHASE1:Hg19::chr9:127260615..127260651,-#_65704eaef37b23c8078e41c91b5804d0p@chr9:127260615..127260651, -
5.98e-34FFCP PHASE1:Hg19::chr21:28820911..28820933,-#_65704eaef37b23c8078e41c91b5804d0p1@ENST00000420186, p1@uc002ymh.2

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0003887&oldid=415058"