CL:0000805
From FANTOM5_SSTAR
Name: | immature single positive thymocyte |
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Namespace: | cell |
Definition: | "A thymocyte that has the phenotype CD4-negative, CD8-positive, CD44-negative, CD25-negative, and pre-TCR-positive." [GO_REF:0000031, GOC:add, GOC:tfm, http://www.immgen.org/index_content.html, ISBN:0781735149] |
Synonyms: |
"immature single positive T cell" EXACT [] "immature single positive T lymphocyte" EXACT [] "immature single positive T-lymphocyte" EXACT [] "ISP" EXACT [] "T.ISP.th" EXACT [] |
Comments: | Note that this type of thymocyte has passed the beta-selection checkpoint and is rapidly proliferating and rearranging the T cell receptor alpha chain and expressing the CD8 coreceptor. This stage comes between the DN4 and DP stages. |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | CL:0000893(thymocyte) |
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develops_from: | CL:0000808(DN4 thymocyte) |
Children
develops from: | CL:0000809 (double-positive, alpha-beta thymocyte) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000805 (immature single positive thymocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data