CL:0002494
From FANTOM5_SSTAR
Name: | cardiocyte | |
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Namespace: | cell | |
Definition: | "A cell located in the heart, including both muscle and non muscle cells." [GOC:tfm] | |
Xrefs: |
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Synonyms: | "heart cell" EXACT [] | |
Comments: | From Onard of the FMA: Cardiac muscle cell or cardiac myocyte is a striated muscle cell. Cardiocyte on the other hand is any cell in the heart which includes cells other than muscle cells (e.g. endothelial cell of endocardium). Unless there is a consensus among anatomists that cardiocytes refer only to muscle cells, we will treat them as a general class of cells in the heart. | |
Created by: | tmeehan | |
Creation date: | 2010-12-07T09:37:22Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | CL:0000548(animal cell),CL:0002371(somatic cell) |
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part_of: | UBERON:0000948(heart) |
Children
is a: | CL:0000513 (cardiac muscle myoblast),CL:0000569 (cardiac mesenchymal cell),CL:0000746 (cardiac muscle cell),CL:0002548 (cardiac fibroblast),CL:0002592 (smooth muscle cell of the coronary artery) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11268-116G8 (Fibroblast - Cardiac, donor1)
- 11286-116I8 (Smooth Muscle Cells - Coronary Artery, donor1)
- 11345-117G4 (Fibroblast - Cardiac, donor2)
- 11363-117I4 (Smooth Muscle Cells - Coronary Artery, donor2)
- 11417-118F4 (Fibroblast - Cardiac, donor3)
- 11435-118H4 (Smooth Muscle Cells - Coronary Artery, donor3)
- 11452-119A3 (Fibroblast - Cardiac, donor4)
- 11456-119A7 (Fibroblast - Cardiac, donor5)
- 11460-119B2 (Fibroblast - Cardiac, donor6)
- 11525-119I4 (Cardiac Myocyte, donor1)
... further results Mouse (Mus musculus)
- 11268-116G8 (Fibroblast - Cardiac, donor1)
- 11286-116I8 (Smooth Muscle Cells - Coronary Artery, donor1)
- 11345-117G4 (Fibroblast - Cardiac, donor2)
- 11363-117I4 (Smooth Muscle Cells - Coronary Artery, donor2)
- 11417-118F4 (Fibroblast - Cardiac, donor3)
- 11435-118H4 (Smooth Muscle Cells - Coronary Artery, donor3)
- 11452-119A3 (Fibroblast - Cardiac, donor4)
- 11456-119A7 (Fibroblast - Cardiac, donor5)
- 11460-119B2 (Fibroblast - Cardiac, donor6)
- 11525-119I4 (Cardiac Myocyte, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002494 (cardiocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data