CL:0000586

Name:	germ cell
Namespace:	FANTOM
Definition:	"The reproductive cell in multicellular organisms." [MESH:A.05.360.490]
Xrefs:	Expandlinks: BTO:0000535 WBbt:0006796

Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

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Parents

is_a:	CL:0000039(germ line cell)

Children

is a:	FF:10590-108D5 (testicular germ cell embryonal carcinoma cell line:NEC8),FF:10591-108D6 (testicular germ cell embryonal carcinoma cell line:NEC14),FF:10593-108D8 (testicular germ cell embryonal carcinoma cell line:NEC15),FF:10786-110H3 (testicular germ cell embryonal carcinoma cell line:ITO-II)
derives from:	FF:0101575 (choriocarcinoma cell line sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

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Human (Homo sapiens)

• 10423-106C9 (choriocarcinoma cell line:BeWo)
• 10590-108D5 (testicular germ cell embryonal carcinoma cell line:NEC8)
• 10591-108D6 (testicular germ cell embryonal carcinoma cell line:NEC14)
• 10593-108D8 (testicular germ cell embryonal carcinoma cell line:NEC15)
• 10618-108G6 (choriocarcinoma cell line:T3M-3)
• 10785-110H2 (choriocarcinoma cell line:SCH)
• 10786-110H3 (testicular germ cell embryonal carcinoma cell line:ITO-II)
• 10799-110I7

Mouse (Mus musculus)

• 10423-106C9 (choriocarcinoma cell line:BeWo)
• 10590-108D5 (testicular germ cell embryonal carcinoma cell line:NEC8)
• 10591-108D6 (testicular germ cell embryonal carcinoma cell line:NEC14)
• 10593-108D8 (testicular germ cell embryonal carcinoma cell line:NEC15)
• 10618-108G6 (choriocarcinoma cell line:T3M-3)
• 10785-110H2 (choriocarcinoma cell line:SCH)
• 10786-110H3 (testicular germ cell embryonal carcinoma cell line:ITO-II)
• 10799-110I7

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000586 (germ cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

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P-value	FFCP	Short description

P-value	FFCP	Short description
1.99e-171	FFCP PHASE1:Hg19::chr12:7863680..7863695,+	p3@DPPA3
1.99e-171	FFCP PHASE2:Hg19::chr12:7863680..7863695,+	p3@DPPA3
5.52e-144	FFCP PHASE1:Hg19::chr4:165953147..165953161,+	p3@TRIM60
5.52e-144	FFCP PHASE2:Hg19::chr4:165953147..165953161,+	p3@TRIM60
9.03e-144	FFCP PHASE1:Hg19::chr21:45681768..45681773,-	p4@DNMT3L
9.03e-144	FFCP PHASE2:Hg19::chr21:45681768..45681773,-	p4@DNMT3L
6.94e-140	FFCP PHASE1:Hg19::chr12:8983864..8983875,-	p2@A2ML1-AS1
6.94e-140	FFCP PHASE2:Hg19::chr12:8983864..8983875,-	p2@A2ML1-AS1
1.01e-125	FFCP PHASE1:Hg19::chr12:7864063..7864074,+	p2@DPPA3
1.01e-125	FFCP PHASE2:Hg19::chr12:7864063..7864074,+	p2@DPPA3
5.61e-117	FFCP PHASE2:Hg19::chr12:8983894..8983910,-	p1@A2ML1-AS1
5.61e-117	FFCP PHASE1:Hg19::chr12:8983894..8983910,-	p1@A2ML1-AS1
7.13e-117	FFCP PHASE1:Hg19::chr4:165953174..165953189,+	p1@TRIM60
7.13e-117	FFCP PHASE2:Hg19::chr4:165953174..165953189,+	p1@TRIM60
9.06e-117	FFCP PHASE1:Hg19::chr4:165953213..165953229,+	p2@TRIM60
9.06e-117	FFCP PHASE2:Hg19::chr4:165953213..165953229,+	p2@TRIM60
1.15e-116	FFCP PHASE1:Hg19::chr3:9895464..9895477,-	p@chr3:9895464..9895477, -
1.15e-116	FFCP PHASE2:Hg19::chr3:9895464..9895477,-	p@chr3:9895464..9895477, -
3.15e-112	FFCP PHASE2:Hg19::chr6:6032547..6032560,-	p@chr6:6032547..6032560, -
3.15e-112	FFCP PHASE2:Hg19::chr19:40431300..40431312,-	p@chr19:40431300..40431312, -
3.15e-112	FFCP PHASE2:Hg19::chr15:33905298..33905312,+	p@chr15:33905298..33905312, +
3.15e-112	FFCP PHASE2:Hg19::chr2:71755221..71755234,+	p@chr2:71755221..71755234, +
3.15e-112	FFCP PHASE2:Hg19::chr21:27478988..27478996,-	p@chr21:27478988..27478996, -
3.15e-112	FFCP PHASE2:Hg19::chr19:46003056..46003067,+	p11@PPM1N
3.15e-112	FFCP PHASE2:Hg19::chr19:51883915..51883934,-	p@chr19:51883915..51883934, -
3.15e-112	FFCP PHASE1:Hg19::chr1:38709054..38709062,+	p@chr1:38709054..38709062, +
3.15e-112	FFCP PHASE2:Hg19::chr10:48320905..48320918,+	p@chr10:48320905..48320918, +
3.15e-112	FFCP PHASE2:Hg19::chr6:35511496..35511503,+	p@chr6:35511496..35511503, +
3.15e-112	FFCP PHASE2:Hg19::chr16:9069001..9069012,-	p@chr16:9069001..9069012, -
3.15e-112	FFCP PHASE1:Hg19::chr1:227034858..227034868,+	p@chr1:227034858..227034868, +
3.15e-112	FFCP PHASE2:Hg19::chr6:73935150..73935162,-	p3@KHDC1L
3.15e-112	FFCP PHASE2:Hg19::chr1:24239991..24240012,-	p6@CNR2
3.15e-112	FFCP PHASE1:Hg19::chr12:8045030..8045044,+	p5@NANOGP1
3.15e-112	FFCP PHASE2:Hg19::chr2:71755236..71755242,+	p@chr2:71755236..71755242, +
3.15e-112	FFCP PHASE1:Hg19::chr15:33905298..33905312,+	p@chr15:33905298..33905312, +
3.15e-112	FFCP PHASE1:Hg19::chr1:92406327..92406341,+	p@chr1:92406327..92406341, +
3.15e-112	FFCP PHASE1:Hg19::chr2:65786044..65786055,+	p@chr2:65786044..65786055, +
3.15e-112	FFCP PHASE1:Hg19::chr10:48320905..48320918,+	p@chr10:48320905..48320918, +
3.15e-112	FFCP PHASE1:Hg19::chr19:51883856..51883866,-	p@chr19:51883856..51883866, -
3.15e-112	FFCP PHASE1:Hg19::chr8:133637624..133637635,-	p5@LRRC6
3.15e-112	FFCP PHASE2:Hg19::chr16:24506473..24506474,-	p2@BX538205
3.15e-112	FFCP PHASE2:Hg19::chr11:107782394..107782402,+	p@chr11:107782394..107782402, +
3.15e-112	FFCP PHASE2:Hg19::chr1:227034858..227034868,+	p@chr1:227034858..227034868, +
3.15e-112	FFCP PHASE2:Hg19::chr12:32717031..32717041,+	p@chr12:32717031..32717041, +
3.15e-112	FFCP PHASE1:Hg19::chr2:71755206..71755213,+	p@chr2:71755206..71755213, +
3.15e-112	FFCP PHASE1:Hg19::chr19:40431284..40431296,-	p@chr19:40431284..40431296, -
3.15e-112	FFCP PHASE2:Hg19::chr1:38709054..38709062,+	p@chr1:38709054..38709062, +
3.15e-112	FFCP PHASE1:Hg19::chr7:2309320..2309348,-	p@chr7:2309320..2309348, -
3.15e-112	FFCP PHASE1:Hg19::chr21:27478934..27478945,-	p@chr21:27478934..27478945, -
3.15e-112	FFCP PHASE1:Hg19::chr19:51883879..51883908,-	p@chr19:51883879..51883908, -
3.15e-112	FFCP PHASE1:Hg19::chr8:133637642..133637653,-	p6@LRRC6
3.15e-112	FFCP PHASE1:Hg19::chr11:107782394..107782402,+	p@chr11:107782394..107782402, +
3.15e-112	FFCP PHASE2:Hg19::chr1:92406327..92406341,+	p@chr1:92406327..92406341, +
3.15e-112	FFCP PHASE2:Hg19::chr2:65786044..65786055,+	p@chr2:65786044..65786055, +
3.15e-112	FFCP PHASE2:Hg19::chr12:32717043..32717051,+	p@chr12:32717043..32717051, +
3.15e-112	FFCP PHASE1:Hg19::chr2:233989556..233989568,+	p@chr2:233989556..233989568, +
3.15e-112	FFCP PHASE2:Hg19::chr19:51883856..51883866,-	p@chr19:51883856..51883866, -
3.15e-112	FFCP PHASE1:Hg19::chr16:24506473..24506474,-	p2@BX538205
3.15e-112	FFCP PHASE1:Hg19::chr12:32717031..32717041,+	p@chr12:32717031..32717041, +
3.15e-112	FFCP PHASE1:Hg19::chr4:779349..779383,+	p@chr4:779349..779383, +
3.15e-112	FFCP PHASE1:Hg19::chr2:71755221..71755234,+	p@chr2:71755221..71755234, +
3.15e-112	FFCP PHASE1:Hg19::chr6:6032547..6032560,-	p@chr6:6032547..6032560, -
3.15e-112	FFCP PHASE1:Hg19::chr19:40431300..40431312,-	p@chr19:40431300..40431312, -
3.15e-112	FFCP PHASE2:Hg19::chr8:133637624..133637635,-	p5@LRRC6
3.15e-112	FFCP PHASE1:Hg19::chr21:27478988..27478996,-	p@chr21:27478988..27478996, -
3.15e-112	FFCP PHASE1:Hg19::chr19:51883915..51883934,-	p@chr19:51883915..51883934, -
3.15e-112	FFCP PHASE2:Hg19::chr19:40431284..40431296,-	p@chr19:40431284..40431296, -
3.15e-112	FFCP PHASE2:Hg19::chr2:71755206..71755213,+	p@chr2:71755206..71755213, +
3.15e-112	FFCP PHASE1:Hg19::chr16:9069001..9069012,-	p@chr16:9069001..9069012, -
3.15e-112	FFCP PHASE2:Hg19::chr7:2309320..2309348,-	p@chr7:2309320..2309348, -
3.15e-112	FFCP PHASE2:Hg19::chr21:27478934..27478945,-	p@chr21:27478934..27478945, -
3.15e-112	FFCP PHASE2:Hg19::chr4:779349..779383,+	p@chr4:779349..779383, +
3.15e-112	FFCP PHASE2:Hg19::chr2:233989556..233989568,+	p@chr2:233989556..233989568, +
3.15e-112	FFCP PHASE1:Hg19::chr19:46003056..46003067,+	p11@PPM1N
3.15e-112	FFCP PHASE2:Hg19::chr19:51883879..51883908,-	p@chr19:51883879..51883908, -
3.15e-112	FFCP PHASE1:Hg19::chr6:73935150..73935162,-	p3@KHDC1L
3.15e-112	FFCP PHASE1:Hg19::chr12:32717043..32717051,+	p@chr12:32717043..32717051, +
3.15e-112	FFCP PHASE1:Hg19::chr2:71755236..71755242,+	p@chr2:71755236..71755242, +
3.15e-112	FFCP PHASE1:Hg19::chr1:24239991..24240012,-	p6@CNR2
3.15e-112	FFCP PHASE2:Hg19::chr12:8045030..8045044,+	p5@NANOGP1
3.15e-112	FFCP PHASE2:Hg19::chr8:133637642..133637653,-	p6@LRRC6
3.15e-112	FFCP PHASE1:Hg19::chr6:35511496..35511503,+	p@chr6:35511496..35511503, +
3.67e-112	FFCP PHASE1:Hg19::chr6:35511483..35511494,+	p@chr6:35511483..35511494, +
3.67e-112	FFCP PHASE2:Hg19::chr6:35511483..35511494,+	p@chr6:35511483..35511494, +
1.28e-101	FFCP PHASE1:Hg19::chr21:45681737..45681760,-	p2@DNMT3L
1.28e-101	FFCP PHASE2:Hg19::chr21:45681737..45681760,-	p2@DNMT3L
4.29e-101	FFCP PHASE1:Hg19::chr19:46002982..46002998,+	p8@PPM1N
4.29e-101	FFCP PHASE2:Hg19::chr19:46002982..46002998,+	p8@PPM1N
7.2e-101	FFCP PHASE2:Hg19::chr4:188963120..188963125,+	p@chr4:188963120..188963125, +
7.2e-101	FFCP PHASE1:Hg19::chr4:188963120..188963125,+	p@chr4:188963120..188963125, +
5.5e-100	FFCP PHASE1:Hg19::chr3:48519267..48519301,-	p@chr3:48519267..48519301, -
5.5e-100	FFCP PHASE2:Hg19::chr3:48519267..48519301,-	p@chr3:48519267..48519301, -
1.18e-92	FFCP PHASE1:Hg19::chr21:45681774..45681821,-	p1@DNMT3L
1.18e-92	FFCP PHASE2:Hg19::chr21:45681774..45681821,-	p1@DNMT3L
3.52e-90	FFCP PHASE1:Hg19::chr12:8045012..8045024,+	p4@NANOGP1
3.52e-90	FFCP PHASE1:Hg19::chr3:39268574..39268596,+	p@chr3:39268574..39268596, +
3.52e-90	FFCP PHASE1:Hg19::chr1:10476999..10477027,+	p@chr1:10476999..10477027, +
3.52e-90	FFCP PHASE2:Hg19::chr1:65612630..65612670,+	p@chr1:65612630..65612670, +
3.52e-90	FFCP PHASE1:Hg19::chr19:42965112..42965160,+	p@chr19:42965112..42965160, +
3.52e-90	FFCP PHASE1:Hg19::chr7:5447185..5447197,-	p23@TNRC18

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