Personal tools

CL:0000807

From FANTOM5_SSTAR

Jump to: navigation, search
Name:DN3 thymocyte
Namespace:FANTOM
Definition:"A thymocyte that has the phenotype CD4-negative, CD8-negative, CD44-negative, and CD25-positive and expressing the T cell receptor beta-chain in complex with the pre-T cell receptor alpha chain." [GO_REF:0000031, GOC:add, GOC:tfm, ISBN:0781735149]
Synonyms: "DN3 alpha-beta immature T lymphocyte" EXACT []
"DN3 alpha-beta immature T-cell" EXACT []
"DN3 alpha-beta immature T-lymphocyte" EXACT []
"DN3 cell" EXACT []
"DN3 immature T cell" EXACT []
"double negative 3" EXACT []
"preT.DN3.Th" EXACT []
"TN3 cell" EXACT []
"TN3 thymocyte" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0002489(double negative thymocyte)
develops_from:CL:0000806(DN2 thymocyte)



Children


develops from:CL:0000808 (DN4 thymocyte)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.




Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000807 (DN3 thymocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data