CL:0002178

Name:	epithelial cell of stomach
Namespace:	FANTOM
Definition:	"An epithelial cell found in the lining of the stomach." [GOC:tfm]
Xrefs:	Expandlinks: FMA:62948
Alt_id:	CL:1000399
Created by:	tmeehan
Creation date:	2010-08-25T03:22:08Z

Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

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Parents

is_a:	CL:0002251(epithelial cell of alimentary canal)
part_of:	UBERON:0000945(stomach)

Children

derives from:	FF:0101092 (KATO-III cell sample),FF:0102380 (gastric adenocarcinoma cell line sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

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Human (Homo sapiens)

• 10436-106E4 (signet ring carcinoma cell line:Kato III)
• 10611-108F8
• 10612-108F9 (gastric adenocarcinoma cell line:MKN45)
• 10613-108G1
• 10614-108G2 (gastric adenocarcinoma cell line:MKN1)

Mouse (Mus musculus)

• 10436-106E4 (signet ring carcinoma cell line:Kato III)
• 10611-108F8
• 10612-108F9 (gastric adenocarcinoma cell line:MKN45)
• 10613-108G1
• 10614-108G2 (gastric adenocarcinoma cell line:MKN1)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002178 (epithelial cell of stomach), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

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P-value	FFCP	Short description

P-value	FFCP	Short description
1.52e-87	FFCP PHASE2:Hg19::chr19:1753387..1753395,-	p@chr19:1753387..1753395, -
1.52e-87	FFCP PHASE1:Hg19::chr19:1753387..1753395,-	p@chr19:1753387..1753395, -
2.39e-66	FFCP PHASE2:Hg19::chr2:37609861..37609884,+	p@chr2:37609861..37609884, +
2.39e-66	FFCP PHASE1:Hg19::chr20:61278219..61278228,-	p@chr20:61278219..61278228, -
2.39e-66	FFCP PHASE1:Hg19::chr10:122520908..122520928,+	p@chr10:122520908..122520928, +
2.39e-66	FFCP PHASE1:Hg19::chr2:29220315..29220325,+	p@chr2:29220315..29220325, +
2.39e-66	FFCP PHASE1:Hg19::chr5:167545081..167545101,+	p46@ODZ2
2.39e-66	FFCP PHASE2:Hg19::chr1:1064144..1064148,-	p@chr1:1064144..1064148, -
2.39e-66	FFCP PHASE2:Hg19::chr10:122520908..122520928,+	p@chr10:122520908..122520928, +
2.39e-66	FFCP PHASE1:Hg19::chr3:124209926..124209941,-	p@chr3:124209926..124209941, -
2.39e-66	FFCP PHASE1:Hg19::chr20:61298260..61298263,-	p3@ENST00000411824
2.39e-66	FFCP PHASE2:Hg19::chr2:29220301..29220308,+	p@chr2:29220301..29220308, +
2.39e-66	FFCP PHASE2:Hg19::chr5:496367..496402,-	p@chr5:496367..496402, -
2.39e-66	FFCP PHASE2:Hg19::chr15:42186211..42186222,-	p2@SPTBN5
2.39e-66	FFCP PHASE1:Hg19::chr10:123000012..123000015,+	p@chr10:123000012..123000015, +
2.39e-66	FFCP PHASE1:Hg19::chr15:42186248..42186253,-	p4@SPTBN5
2.39e-66	FFCP PHASE1:Hg19::chr10:29217861..29217870,+	p@chr10:29217861..29217870, +
2.39e-66	FFCP PHASE2:Hg19::chr20:61298207..61298221,-	p2@ENST00000411824
2.39e-66	FFCP PHASE2:Hg19::chr10:123000012..123000015,+	p@chr10:123000012..123000015, +
2.39e-66	FFCP PHASE2:Hg19::chr2:9324969..9324972,-	p@chr2:9324969..9324972, -
2.39e-66	FFCP PHASE2:Hg19::chr10:29217861..29217870,+	p@chr10:29217861..29217870, +
2.39e-66	FFCP PHASE1:Hg19::chr20:61299085..61299091,+	p24@SLCO4A1
2.39e-66	FFCP PHASE1:Hg19::chr6:110282878..110282882,-	p@chr6:110282878..110282882, -
2.39e-66	FFCP PHASE2:Hg19::chr2:121082746..121082759,-	p@chr2:121082746..121082759, -
2.39e-66	FFCP PHASE1:Hg19::chr10:122521149..122521164,+	p@chr10:122521149..122521164, +
2.39e-66	FFCP PHASE1:Hg19::chr5:167545123..167545128,+	p60@ODZ2
2.39e-66	FFCP PHASE1:Hg19::chr13:97775112..97775117,+	p@chr13:97775112..97775117, +
2.39e-66	FFCP PHASE2:Hg19::chr22:46406849..46406852,+	p@chr22:46406849..46406852, +
2.39e-66	FFCP PHASE2:Hg19::chr20:61278219..61278228,-	p@chr20:61278219..61278228, -
2.39e-66	FFCP PHASE2:Hg19::chr10:122521149..122521164,+	p@chr10:122521149..122521164, +
2.39e-66	FFCP PHASE1:Hg19::chr20:61298271..61298272,-	p5@ENST00000411824
2.39e-66	FFCP PHASE2:Hg19::chr2:29220315..29220325,+	p@chr2:29220315..29220325, +
2.39e-66	FFCP PHASE1:Hg19::chr5:499786..499794,-	p@chr5:499786..499794, -
2.39e-66	FFCP PHASE2:Hg19::chr15:42186248..42186253,-	p4@SPTBN5
2.39e-66	FFCP PHASE2:Hg19::chr3:124209926..124209941,-	p@chr3:124209926..124209941, -
2.39e-66	FFCP PHASE1:Hg19::chr2:28762016..28762055,-	p@chr2:28762016..28762055, -
2.39e-66	FFCP PHASE2:Hg19::chr20:61298260..61298263,-	p3@ENST00000411824
2.39e-66	FFCP PHASE2:Hg19::chr17:70417540..70417544,-	p@chr17:70417540..70417544, -
2.39e-66	FFCP PHASE1:Hg19::chr10:123310876..123310882,-	p@chr10:123310876..123310882, -
2.39e-66	FFCP PHASE1:Hg19::chr9:130913176..130913179,+	p@chr9:130913176..130913179, +
2.39e-66	FFCP PHASE2:Hg19::chr13:97775112..97775117,+	p@chr13:97775112..97775117, +
2.39e-66	FFCP PHASE1:Hg19::chr17:70417540..70417544,-	p@chr17:70417540..70417544, -
2.39e-66	FFCP PHASE1:Hg19::chr2:29220943..29220956,+	p@chr2:29220943..29220956, +
2.39e-66	FFCP PHASE2:Hg19::chr20:61299085..61299091,+	p24@SLCO4A1
2.39e-66	FFCP PHASE2:Hg19::chr11:76903378..76903384,+	p@chr11:76903378..76903384, +
2.39e-66	FFCP PHASE1:Hg19::chr5:167545165..167545170,+	p61@ODZ2
2.39e-66	FFCP PHASE2:Hg19::chr10:123310876..123310882,-	p@chr10:123310876..123310882, -
2.39e-66	FFCP PHASE1:Hg19::chr22:49239060..49239068,+	p@chr22:49239060..49239068, +
2.39e-66	FFCP PHASE2:Hg19::chr5:167545081..167545101,+	p46@ODZ2
2.39e-66	FFCP PHASE1:Hg19::chr13:73809919..73809926,+	p@chr13:73809919..73809926, +
2.39e-66	FFCP PHASE1:Hg19::chr10:123378808..123378819,-	p@chr10:123378808..123378819, -
2.39e-66	FFCP PHASE1:Hg19::chr10:123256229..123256238,-	p@chr10:123256229..123256238, -
2.39e-66	FFCP PHASE2:Hg19::chr10:123378808..123378819,-	p@chr10:123378808..123378819, -
2.39e-66	FFCP PHASE1:Hg19::chr10:122520831..122520842,+	p@chr10:122520831..122520842, +
2.39e-66	FFCP PHASE2:Hg19::chr20:61298271..61298272,-	p5@ENST00000411824
2.39e-66	FFCP PHASE2:Hg19::chr10:123256229..123256238,-	p@chr10:123256229..123256238, -
2.39e-66	FFCP PHASE2:Hg19::chr6:110282878..110282882,-	p@chr6:110282878..110282882, -
2.39e-66	FFCP PHASE1:Hg19::chr20:61316967..61316974,-	p@chr20:61316967..61316974, -
2.39e-66	FFCP PHASE1:Hg19::chr19:10142279..10142292,-	p@chr19:10142279..10142292, -
2.39e-66	FFCP PHASE2:Hg19::chr10:122520831..122520842,+	p@chr10:122520831..122520842, +
2.39e-66	FFCP PHASE1:Hg19::chr11:76903378..76903384,+	p@chr11:76903378..76903384, +
2.39e-66	FFCP PHASE1:Hg19::chr10:123313149..123313152,+	p@chr10:123313149..123313152, +
2.39e-66	FFCP PHASE2:Hg19::chr2:28762016..28762055,-	p@chr2:28762016..28762055, -
2.39e-66	FFCP PHASE1:Hg19::chr5:496367..496402,-	p@chr5:496367..496402, -
2.39e-66	FFCP PHASE1:Hg19::chr6:167684529..167684536,+	p6@UNC93A
2.39e-66	FFCP PHASE1:Hg19::chr20:61298173..61298178,-	p4@ENST00000411824
2.39e-66	FFCP PHASE1:Hg19::chr2:37609861..37609884,+	p@chr2:37609861..37609884, +
2.39e-66	FFCP PHASE1:Hg19::chr15:42186200..42186205,-	p3@SPTBN5
2.39e-66	FFCP PHASE2:Hg19::chr13:73809919..73809926,+	p@chr13:73809919..73809926, +
2.39e-66	FFCP PHASE1:Hg19::chr10:29217811..29217823,+	p@chr10:29217811..29217823, +
2.39e-66	FFCP PHASE2:Hg19::chr10:123313149..123313152,+	p@chr10:123313149..123313152, +
2.39e-66	FFCP PHASE2:Hg19::chr5:167545123..167545128,+	p60@ODZ2
2.39e-66	FFCP PHASE1:Hg19::chr11:27516905..27516910,-	p25@LIN7C
2.39e-66	FFCP PHASE2:Hg19::chr11:27516905..27516910,-	p25@LIN7C
2.39e-66	FFCP PHASE2:Hg19::chr10:29217811..29217823,+	p@chr10:29217811..29217823, +
2.39e-66	FFCP PHASE1:Hg19::chr10:123378848..123378857,-	p@chr10:123378848..123378857, -
2.39e-66	FFCP PHASE2:Hg19::chr2:29220943..29220956,+	p@chr2:29220943..29220956, +
2.39e-66	FFCP PHASE2:Hg19::chr5:499786..499794,-	p@chr5:499786..499794, -
2.39e-66	FFCP PHASE1:Hg19::chr1:1064144..1064148,-	p@chr1:1064144..1064148, -
2.39e-66	FFCP PHASE2:Hg19::chr10:123378848..123378857,-	p@chr10:123378848..123378857, -
2.39e-66	FFCP PHASE1:Hg19::chr2:121082746..121082759,-	p@chr2:121082746..121082759, -
2.39e-66	FFCP PHASE1:Hg19::chr10:122520854..122520858,+	p@chr10:122520854..122520858, +
2.39e-66	FFCP PHASE1:Hg19::chr2:29220301..29220308,+	p@chr2:29220301..29220308, +
2.39e-66	FFCP PHASE1:Hg19::chr22:46406849..46406852,+	p@chr22:46406849..46406852, +
2.39e-66	FFCP PHASE2:Hg19::chr19:10142279..10142292,-	p@chr19:10142279..10142292, -
2.39e-66	FFCP PHASE2:Hg19::chr17:70619903..70619909,+	p@chr17:70619903..70619909, +
2.39e-66	FFCP PHASE2:Hg19::chr10:122520854..122520858,+	p@chr10:122520854..122520858, +
2.39e-66	FFCP PHASE1:Hg19::chr20:61298207..61298221,-	p2@ENST00000411824
2.39e-66	FFCP PHASE1:Hg19::chr2:9324969..9324972,-	p@chr2:9324969..9324972, -
2.39e-66	FFCP PHASE2:Hg19::chr9:130913176..130913179,+	p@chr9:130913176..130913179, +
2.39e-66	FFCP PHASE2:Hg19::chr15:42186200..42186205,-	p3@SPTBN5
2.39e-66	FFCP PHASE2:Hg19::chr22:49239060..49239068,+	p@chr22:49239060..49239068, +
2.39e-66	FFCP PHASE1:Hg19::chr17:70619903..70619909,+	p@chr17:70619903..70619909, +
2.39e-66	FFCP PHASE1:Hg19::chr10:122910650..122910656,+	p@chr10:122910650..122910656, +
2.39e-66	FFCP PHASE1:Hg19::chr15:42186211..42186222,-	p2@SPTBN5
2.39e-66	FFCP PHASE2:Hg19::chr20:61316967..61316974,-	p@chr20:61316967..61316974, -
2.39e-66	FFCP PHASE1:Hg19::chr10:29217837..29217846,+	p@chr10:29217837..29217846, +
2.39e-66	FFCP PHASE2:Hg19::chr5:167545165..167545170,+	p61@ODZ2
2.39e-66	FFCP PHASE2:Hg19::chr6:167684529..167684536,+	p6@UNC93A
2.39e-66	FFCP PHASE2:Hg19::chr20:61298173..61298178,-	p4@ENST00000411824

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