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CL:0002250

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Name:intestinal crypt stem cell
Namespace:FANTOM
Definition:"A cell that is found in a zone occupying the bottom region of the crypt; provide the source of most of the cell types of the intestinal epithelium; proliferate by mitotic division; differentiates into columnar or goblet cells." [GOC:tfm, ISBN:0517223651]
Xrefs:
links:
FMA:63379
Synonyms: "stem cell of intestinal crypt of lieberkuhn" EXACT []
Created by:tmeehan
Creation date:2010-09-08T09:21:22Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000048(multi fate stem cell),CL:0002563(intestinal epithelial cell)
part_of:UBERON:0001983(crypt of Lieberkuhn)



Children


derives from:FF:0000079 (mouse Lgr5-positive intestinal epithelial stem cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

  • 12228-129F5 (Lgr5 positive intestinal stem cells, pool1)
  • 12229-129F6 (Lgr5 positive intestinal stem cells, pool2)
  • 12230-129F7 (Lgr5 positive intestinal stem cells, pool3)

Mouse (Mus musculus)

  • 12228-129F5 (Lgr5 positive intestinal stem cells, pool1)
  • 12229-129F6 (Lgr5 positive intestinal stem cells, pool2)
  • 12230-129F7 (Lgr5 positive intestinal stem cells, pool3)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002250 (intestinal crypt stem cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data