CL:0002252

Name:	epithelial cell of esophagus
Namespace:	FANTOM
Definition:	"An epithelial cell of the esophagus." [GOC:tfm]
Xrefs:	Expandlinks: FMA:63071
Alt_id:	CL:1000402
Created by:	tmeehan
Creation date:	2010-09-08T09:28:20Z

Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

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Parents

is_a:	CL:0002251(epithelial cell of alimentary canal)
part_of:	UBERON:0001043(esophagus)

Children

is a:	FF:0102428 (esophageal squamous cell carcinoma cell line)
derives from:	FF:0000056 (human epithelial cell of esophagus sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

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Human (Homo sapiens)

• 10658-109C1
• 10660-109C3
• 10661-109C4
• 10665-109C8
• 11507-119G4 (Esophageal Epithelial Cells, donor1)
• 11587-120G3 (Esophageal Epithelial Cells, donor2)
• 11668-122G3 (Esophageal Epithelial Cells, donor3)

Mouse (Mus musculus)

• 10658-109C1
• 10660-109C3
• 10661-109C4
• 10665-109C8
• 11507-119G4 (Esophageal Epithelial Cells, donor1)
• 11587-120G3 (Esophageal Epithelial Cells, donor2)
• 11668-122G3 (Esophageal Epithelial Cells, donor3)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002252 (epithelial cell of esophagus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

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P-value	FFCP	Short description

P-value	FFCP	Short description
4.66e-66	FFCP PHASE1:Hg19::chr6:47253676..47253680,-	p22@TNFRSF21
4.66e-66	FFCP PHASE2:Hg19::chr6:47253676..47253680,-	p22@TNFRSF21
9.91e-41	FFCP PHASE1:Hg19::chr10:105495838..105495848,-	p@chr10:105495838..105495848, -
9.91e-41	FFCP PHASE2:Hg19::chr10:105495838..105495848,-	p@chr10:105495838..105495848, -
3.3e-40	FFCP PHASE1:Hg19::chr17:39767356..39767365,+	p@chr17:39767356..39767365, +
3.3e-40	FFCP PHASE2:Hg19::chr17:39767356..39767365,+	p@chr17:39767356..39767365, +
5.05e-34	FFCP PHASE1:Hg19::chrX:102977640..102977644,-	p@chrX:102977640..102977644, -
5.05e-34	FFCP PHASE2:Hg19::chrX:102977640..102977644,-	p@chrX:102977640..102977644, -
7.06e-34	FFCP PHASE1:Hg19::chr20:43726572..43726588,+	p@chr20:43726572..43726588, +
7.06e-34	FFCP PHASE2:Hg19::chr20:43726572..43726588,+	p@chr20:43726572..43726588, +
9.99e-30	FFCP PHASE2:Hg19::chr2:227008823..227008831,-	p@chr2:227008823..227008831, -
9.99e-30	FFCP PHASE1:Hg19::chr2:227008823..227008831,-	p@chr2:227008823..227008831, -
1.33e-29	FFCP PHASE1:Hg19::chr17:71333971..71333975,-	p@chr17:71333971..71333975, -
1.33e-29	FFCP PHASE2:Hg19::chr17:71333971..71333975,-	p@chr17:71333971..71333975, -
2.37e-29	FFCP PHASE1:Hg19::chr1:19403546..19403571,-	p@chr1:19403546..19403571, -
2.37e-29	FFCP PHASE2:Hg19::chr1:19403546..19403571,-	p@chr1:19403546..19403571, -
3.16e-29	FFCP PHASE1:Hg19::chr5:1882170..1882182,-	p3@IRX4
3.16e-29	FFCP PHASE2:Hg19::chr5:1882170..1882182,-	p3@IRX4
4.61e-26	FFCP PHASE2:Hg19::chr11:8795787..8795804,-	p26@ST5
4.61e-26	FFCP PHASE1:Hg19::chr11:8795787..8795804,-	p26@ST5
5.93e-26	FFCP PHASE1:Hg19::chr17:18907460..18907461,-	p12@FAM83G
5.93e-26	FFCP PHASE2:Hg19::chr17:18907460..18907461,-	p12@FAM83G
5.93e-26	FFCP PHASE1:Hg19::chr1:153533849..153533860,-	p@chr1:153533849..153533860, -
5.93e-26	FFCP PHASE2:Hg19::chr1:153533849..153533860,-	p@chr1:153533849..153533860, -
5.93e-26	FFCP PHASE1:Hg19::chr16:87865427..87865438,-	p28@SLC7A5
5.93e-26	FFCP PHASE2:Hg19::chr16:87865427..87865438,-	p28@SLC7A5
2.1e-23	FFCP PHASE1:Hg19::chr3:38017384..38017388,+	p@chr3:38017384..38017388, +
2.1e-23	FFCP PHASE2:Hg19::chr3:38017384..38017388,+	p@chr3:38017384..38017388, +
3.28e-23	FFCP PHASE2:Hg19::chr12:52884676..52884706,-	p13@KRT6A
3.28e-23	FFCP PHASE1:Hg19::chr17:73737085..73737088,+	p@chr17:73737085..73737088, +
3.28e-23	FFCP PHASE2:Hg19::chr17:73737085..73737088,+	p@chr17:73737085..73737088, +
3.28e-23	FFCP PHASE1:Hg19::chr5:150970911..150970920,-	p3@FAT2
3.28e-23	FFCP PHASE1:Hg19::chr12:52884676..52884706,-	p13@KRT6A
3.28e-23	FFCP PHASE2:Hg19::chr5:150970911..150970920,-	p3@FAT2
5.13e-23	FFCP PHASE2:Hg19::chr13:61507880..61507904,-	p@chr13:61507880..61507904, -
5.13e-23	FFCP PHASE1:Hg19::chr13:61507880..61507904,-	p@chr13:61507880..61507904, -
2.82e-21	FFCP PHASE1:Hg19::chr17:38632125..38632156,-	p@chr17:38632125..38632156, -
2.82e-21	FFCP PHASE1:Hg19::chr7:158196067..158196075,-	p@chr7:158196067..158196075, -
2.82e-21	FFCP PHASE2:Hg19::chr7:158196067..158196075,-	p@chr7:158196067..158196075, -
2.82e-21	FFCP PHASE2:Hg19::chr17:38632125..38632156,-	p@chr17:38632125..38632156, -
4.22e-21	FFCP PHASE2:Hg19::chr16:2030183..2030227,-	p@chr16:2030183..2030227, -
4.22e-21	FFCP PHASE1:Hg19::chr16:2030183..2030227,-	p@chr16:2030183..2030227, -
5.16e-21	FFCP PHASE1:Hg19::chr9:131675060..131675070,+	p40@LRRC8A
5.16e-21	FFCP PHASE2:Hg19::chr9:131675060..131675070,+	p40@LRRC8A
7.72e-21	FFCP PHASE2:Hg19::chr16:70731529..70731532,-	p@chr16:70731529..70731532, -
7.72e-21	FFCP PHASE1:Hg19::chr16:70731529..70731532,-	p@chr16:70731529..70731532, -
9.43e-21	FFCP PHASE1:Hg19::chr17:79061332..79061350,+	p@chr17:79061332..79061350, +
9.43e-21	FFCP PHASE2:Hg19::chr17:79061332..79061350,+	p@chr17:79061332..79061350, +
1.3e-19	FFCP PHASE1:Hg19::chr6:44096519..44096530,-	p@chr6:44096519..44096530, -
1.3e-19	FFCP PHASE2:Hg19::chr6:44096519..44096530,-	p@chr6:44096519..44096530, -
2.25e-19	FFCP PHASE1:Hg19::chr17:39778698..39778748,-	p@chr17:39778698..39778748, -
2.25e-19	FFCP PHASE2:Hg19::chr17:39778698..39778748,-	p@chr17:39778698..39778748, -
2.71e-19	FFCP PHASE2:Hg19::chr14:23777630..23777642,-	p@chr14:23777630..23777642, -
2.71e-19	FFCP PHASE1:Hg19::chr14:23777630..23777642,-	p@chr14:23777630..23777642, -
3.25e-19	FFCP PHASE1:Hg19::chr16:57954525..57954533,-	p@chr16:57954525..57954533, -
3.25e-19	FFCP PHASE2:Hg19::chr16:57954525..57954533,-	p@chr16:57954525..57954533, -
3.16e-18	FFCP PHASE1:Hg19::chr19:13692483..13692485,-	p@chr19:13692483..13692485, -
3.16e-18	FFCP PHASE2:Hg19::chr19:13692483..13692485,-	p@chr19:13692483..13692485, -
4.44e-18	FFCP PHASE1:Hg19::chr4:6955908..6955919,+	p9@TBC1D14
4.44e-18	FFCP PHASE2:Hg19::chr4:6955908..6955919,+	p9@TBC1D14
4.44e-18	FFCP PHASE1:Hg19::chr16:66945145..66945152,-	p@chr16:66945145..66945152, -
4.44e-18	FFCP PHASE2:Hg19::chr16:66945145..66945152,-	p@chr16:66945145..66945152, -
6.23e-18	FFCP PHASE2:Hg19::chr12:28125953..28125964,-	p17@PTHLH
6.23e-18	FFCP PHASE2:Hg19::chr11:128812910..128812927,-	p2@TP53AIP1
6.23e-18	FFCP PHASE1:Hg19::chr17:74582227..74582230,-	p10@ST6GALNAC2
6.23e-18	FFCP PHASE2:Hg19::chr17:74582227..74582230,-	p10@ST6GALNAC2
6.23e-18	FFCP PHASE1:Hg19::chr12:28125953..28125964,-	p17@PTHLH
6.23e-18	FFCP PHASE1:Hg19::chr11:128812910..128812927,-	p2@TP53AIP1
7.37e-18	FFCP PHASE1:Hg19::chr3:126676298..126676310,+	p@chr3:126676298..126676310, +
7.37e-18	FFCP PHASE2:Hg19::chr3:126676298..126676310,+	p@chr3:126676298..126676310, +
1.22e-17	FFCP PHASE2:Hg19::chr17:38633789..38633809,+	p@chr17:38633789..38633809, +
1.22e-17	FFCP PHASE1:Hg19::chr17:38633789..38633809,+	p@chr17:38633789..38633809, +
7.57e-17	FFCP PHASE1:Hg19::chr11:72939150..72939161,+	p@chr11:72939150..72939161, +
7.57e-17	FFCP PHASE1:Hg19::chr21:38631055..38631068,-	p@chr21:38631055..38631068, -
7.57e-17	FFCP PHASE2:Hg19::chr21:38631055..38631068,-	p@chr21:38631055..38631068, -
7.57e-17	FFCP PHASE2:Hg19::chr11:72939150..72939161,+	p@chr11:72939150..72939161, +
1.21e-16	FFCP PHASE1:Hg19::chr1:236558370..236558376,+	p8@EDARADD
1.21e-16	FFCP PHASE1:Hg19::chr17:60782123..60782133,+	p@chr17:60782123..60782133, +
1.21e-16	FFCP PHASE2:Hg19::chr1:236558370..236558376,+	p8@EDARADD
1.21e-16	FFCP PHASE2:Hg19::chr17:60782123..60782133,+	p@chr17:60782123..60782133, +
1.41e-16	FFCP PHASE2:Hg19::chr12:52774351..52774355,+	p1@ENST00000547174
1.41e-16	FFCP PHASE1:Hg19::chr12:116955659..116955671,+	p1@ENST00000552992
1.41e-16	FFCP PHASE1:Hg19::chr12:52774351..52774355,+	p1@ENST00000547174
1.41e-16	FFCP PHASE2:Hg19::chr12:116955659..116955671,+	p1@ENST00000552992
1.65e-16	FFCP PHASE1:Hg19::chr12:52908434..52908443,-	p@chr12:52908434..52908443, -
1.65e-16	FFCP PHASE2:Hg19::chr12:52908434..52908443,-	p@chr12:52908434..52908443, -
1.93e-16	FFCP PHASE1:Hg19::chr2:231649545..231649550,-	p@chr2:231649545..231649550, -
1.93e-16	FFCP PHASE2:Hg19::chr2:231649545..231649550,-	p@chr2:231649545..231649550, -
2.25e-16	FFCP PHASE1:Hg19::chr17:80575169..80575172,-	p@chr17:80575169..80575172, -
2.25e-16	FFCP PHASE2:Hg19::chr17:80575169..80575172,-	p@chr17:80575169..80575172, -
8.63e-16	FFCP PHASE1:Hg19::chr17:74582066..74582075,-	p9@ST6GALNAC2
8.63e-16	FFCP PHASE2:Hg19::chr17:74582066..74582075,-	p9@ST6GALNAC2
1.78e-15	FFCP PHASE2:Hg19::chr21:44957855..44957891,-	p@chr21:44957855..44957891, -
1.78e-15	FFCP PHASE1:Hg19::chr21:44957855..44957891,-	p@chr21:44957855..44957891, -
2.38e-15	FFCP PHASE2:Hg19::chr22:46933762..46933780,+	p@chr22:46933762..46933780, +
2.38e-15	FFCP PHASE1:Hg19::chr22:46933762..46933780,+	p@chr22:46933762..46933780, +
5.42e-15	FFCP PHASE1:Hg19::chr12:52887237..52887248,-	p12@KRT6A
5.42e-15	FFCP PHASE2:Hg19::chr12:52887237..52887248,-	p12@KRT6A
6.22e-15	FFCP PHASE1:Hg19::chr4:3387240..3387255,+	p13@RGS12
6.22e-15	FFCP PHASE2:Hg19::chr4:3387240..3387255,+	p13@RGS12

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