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CL:0002476

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Name:bone marrow macrophage
Namespace:FANTOM
Definition:"A tissue-resident macrophage located in the bone marrow. This cell type is B220-negative, CD3e-negative, Ly-6C-negative, CD115-positive, F4/80-positive." [GOC:tfm, http://www.immgen.org/index_content.html]
Xrefs:
links:
BTO:0004732
Synonyms: "MF.BM" RELATED []
Created by:tmeehan
Creation date:2010-11-23T04:19:25Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000864(tissue-resident macrophage),CL:1001610(bone marrow hematopoietic cell)
part_of:UBERON:0002371(bone marrow)



Children


is a:FF:3704-172A1 (macrophage, bone marrow derived),FF:3967-173D4 (macrophage, TB infection, non-stimulated BMDM, without Mtb)
derives from:FF:0200021 (macrophage, bone marrow-derived sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

  • 2171-50H8 (macrophage, bone marrow derived)
  • 3560-170A1 (macrophage, bone marrow derived)
  • 3632-171A1 (macrophage, bone marrow derived)
  • 3704-172A1 (macrophage, bone marrow derived)
  • 3967-173D4 (macrophage, TB infection, non-stimulated BMDM, without Mtb)

Mouse (Mus musculus)

  • 2171-50H8 (macrophage, bone marrow derived)
  • 3560-170A1 (macrophage, bone marrow derived)
  • 3632-171A1 (macrophage, bone marrow derived)
  • 3704-172A1 (macrophage, bone marrow derived)
  • 3967-173D4 (macrophage, TB infection, non-stimulated BMDM, without Mtb)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002476 (bone marrow macrophage), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data