EntrezGene:77569

Symbol:	Limch1
Description:	LIM and calponin homology domains 1
Synonyms:	3732412D22Rik, mKIAA1102
Species:	Mouse (Mus musculus)
Xrefs:	ExpandEntrezGene:77569 MGI:1924819 Ensembl:ENSMUSG00000037736 Vega:OTTMUSG00000028044
Associated motifs:	NA
Transcripton Factor?:	No

TSS regions

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Mm9::chr5:67136635..67136646,+	p10@Limch1
Mm9::chr5:67136661..67136679,+	p11@Limch1
Mm9::chr5:67136735..67136749,+	p12@Limch1
Mm9::chr5:67137071..67137076,+	p18@Limch1
Mm9::chr5:67137095..67137135,+	p1@Limch1
Mm9::chr5:67289649..67289702,+	p2@Limch1
Mm9::chr5:67289716..67289733,+	p5@Limch1
Mm9::chr5:67359660..67359686,+	p7@Limch1
Mm9::chr5:67359771..67359785,+	p9@Limch1
Mm9::chr5:67359798..67359814,+	p3@Limch1
TSS peak ID	Short_description

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TSS expression

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Sample	p1@Limch1	p2@Limch1	p3@Limch1	p5@Limch1

Sample	p1@Limch1	p2@Limch1	p3@Limch1	p5@Limch1
prostate, adult.CNhs10470.859-1F8	159.88	0.00	1.32	0.00
lung, adult.CNhs10474.28-22B1	145.77	243.87	0.74	17.92
lung, neonate N30.CNhs11133.1394-42H2	145.37	326.33	1.16	39.20
lung, neonate N20.CNhs11109.822-18A4	134.70	314.62	1.97	32.12
lung, neonate N25.CNhs11119.1359-25C7	120.19	302.37	1.55	44.03
heart, neonate N25.CNhs11196.1351-25D3	113.51	0.22	0.66	0.00
heart, neonate N20.CNhs11127.821-26I6	105.56	0.15	0.58	0.00
lung, neonate N00.CNhs11224.640-42C6	104.20	220.50	3.71	51.52
lung, neonate N06.CNhs11212.683-20E5	99.63	229.52	3.94	72.67
heart, neonate N30.CNhs11202.1390-42D2	98.78	0.13	0.94	0.00
lung, neonate N10.CNhs11219.750-23E6	96.63	200.12	2.55	64.10
heart, neonate N16.CNhs11209.782-15G1	84.07	0.16	0.57	0.08
lung, neonate N07.CNhs11111.715-19A3	80.83	202.86	2.66	85.71
lung, embryo E18.CNhs10583.1287-20I6	78.79	197.81	6.90	27.14
spinal cord, adult.CNhs10505.24-13C9	77.69	0.00	2.41	0.00
heart, neonate N10.CNhs11118.749-24G1	74.37	0.00	0.33	0.00
medulla oblongata, neonate N30.CNhs11200.1396-42A3	73.96	0.00	1.41	0.00
medulla oblongata, adult.CNhs10477.17-12C2	73.37	0.00	0.64	0.00
olfactory brain, adult.CNhs10489.18-22I9	70.05	0.00	2.25	0.00
vesicular gland, adult.CNhs10491.51-27F8	63.20	0.00	0.50	0.00
corpora quadrigemina, adult.CNhs10501.16-22A4	62.01	0.00	1.95	0.00
corpus striatum, adult.CNhs10487.19-21D8	61.76	24.25	1.83	0.00
diencephalon, neonate N30.CNhs11201.1388-42B2	58.08	7.95	1.46	0.00
muscle (biceps femoris), neonate N30.CNhs11129.1389-42C2	54.03	1.01	4.54	0.00
bone (os femoris), neonate N02.CNhs11227.1985-43F5	53.06	1.46	10.03	0.00
adrenal gland, adult.CNhs10508.49-24D7	52.10	0.30	0.00	0.00
diencephalon, adult.CNhs10482.20-12F2	50.70	1.25	1.66	0.00
aorta, adult.CNhs10498.46-23H1	48.59	0.58	0.72	0.00
Mouse hepatic Sinusoidal Endothelial Cells, donor1.CNhs13209.11830-124G3	47.83	0.00	1.16	0.00
hippocampus, adult.CNhs10478.13-16E8	47.74	0.00	4.21	0.00
adrenal gland, neonate N25.CNhs11223.1377-27I3	47.25	0.00	0.38	0.00
whole body, neonate N01.CNhs10576.659-23C6	46.87	2.30	9.37	0.00
whole body, neonate N10.CNhs10518.761-6B4	46.61	0.93	5.33	0.00
tongue, adult.CNhs10499.32-1B4	44.67	0.23	2.49	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs11184.3139-67G5	44.33	11.22	1.68	0.56
whole body, neonate N06.CNhs10515.692-21D1	43.68	1.99	5.96	0.00
adrenal gland, neonate N00.CNhs11191.1311-23C1	43.16	0.00	1.18	0.00
cortex, adult.CNhs10473.12-14D5	43.11	1.04	2.09	0.00
Mouse Neurons - raphe, donor3.CNhs12619.11645-122D7	42.40	0.00	2.30	0.00
cerebellum, adult.CNhs10494.15-8B2	41.57	0.00	3.51	0.00
pituitary gland, adult.CNhs10493.21-1G8	41.53	0.00	0.34	0.00
cortex, neonate N30.CNhs11107.1392-42F2	40.91	1.53	2.81	0.26
cerebellum, neonate N30.CNhs11135.1395-42I2	39.79	0.00	3.35	0.00
eyeball, neonate N16.CNhs11188.777-19A2	39.58	0.00	1.29	0.00
forelimb, embryo E15.CNhs11007.437-20E7	39.48	3.06	4.17	0.00
lung, embryo E17.CNhs10605.480-44A6	39.20	109.21	3.35	19.10
visual cortex - wildtype, neonate N30, donor2.CNhs13035.10239-104A5	38.53	0.00	0.00	0.00
visual cortex - wildtype, neonate N60-70, donor1.CNhs13037.10241-104A7	38.28	0.00	0.00	0.00
Mouse Neurons - substantia nigra, donor5.CNhs12614.11490-119E5	38.27	0.56	1.69	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs10479.3139-67G5	38.00	7.56	1.33	0.89
whole body, embryo E17.5, pool1 (internal control).CNhs10607.3139-67G5	36.40	7.17	2.45	1.51
Mouse Neurons - raphe, donor2.CNhs12636.11740-123F3	36.26	0.00	0.89	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs10527.3139-67G5	35.88	8.09	2.53	1.26
forelimb, embryo E17.CNhs10598.1517-43C4	35.87	2.79	3.48	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs11048.3139-67G5	35.46	10.76	2.91	0.73
whole body, embryo E18.CNhs10516.493-3B3	35.09	11.23	2.81	1.64
whole body, embryo E17.5, pool1 (internal control).CNhs10591.3139-67G5	34.73	10.14	2.53	0.25
whole body, embryo E17.5, pool1 (internal control).CNhs10856.3139-67G5	34.62	8.24	1.65	0.82
Mouse Neurons - substantia nigra, donor6.CNhs12643.11770-123I6	34.53	0.00	1.38	0.00
visual cortex - wildtype, neonate N30, donor3.CNhs13036.10240-104A6	34.43	0.68	0.68	0.00
Mouse Neurons - ventral spinal cord, donor1.CNhs12632.11725-123D6	34.18	0.00	2.06	0.00
Mouse Neurons - raphe, donor1.CNhs12631.11722-123D3	34.14	0.00	2.20	0.00
Clontech Mouse Universal Reference Total RNA, pool1.CNhs10609.10001-101A3	34.02	36.23	1.19	3.32
whole body, embryo E17.5, pool1 (internal control).CNhs10725.3139-67G5	33.82	6.67	1.43	0.95
whole body, neonate N00.CNhs10525.657-19C2	33.73	10.10	5.80	2.58
whole body, embryo E17.5, pool1 (internal control).CNhs10511.3139-67G5	33.70	12.52	1.93	0.64
visual cortex - wildtype, neonate N60-70, donor3.CNhs13039.10243-104A9	33.65	0.00	0.52	0.00
kidney, neonate N10.CNhs11206.758-6D5	33.14	0.06	0.76	0.00
forelimb, embryo E18.CNhs11008.1520-43B5	33.13	3.50	2.88	0.00
kidney, neonate N20.CNhs11113.832-19I1	33.06	0.00	4.87	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs11000.3139-67G5	32.57	9.94	1.71	2.06
Mouse Neurons - substantia nigra, donor4, tech_rep1.CNhs12612.11489-119E4	32.39	0.00	0.56	0.00
Mouse Neurons - ventral spinal cord, donor2.CNhs12638.11743-123F6	32.18	0.28	1.85	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs11246.3139-67G5	31.92	4.91	0.41	0.82
whole body, embryo E17.5, pool1 (internal control).CNhs10880.3139-67G5	31.79	9.27	1.77	1.47
whole body, embryo E17.5, pool1 (internal control).CNhs10655.3139-67G5	31.47	7.24	2.58	1.44
whole body, embryo E17.5, pool1 (internal control).CNhs10639.3139-67G5	31.31	8.13	3.20	1.02
whole body, embryo E17.5, pool1 (internal control).CNhs11278.3139-67G5	31.30	5.42	2.79	1.39
whole body, embryo E17.5, pool1 (internal control).CNhs11032.3139-67G5	31.24	9.78	2.62	0.72
whole body, embryo E17.5, pool1 (internal control).CNhs10495.3139-67G5	31.11	8.45	1.65	1.24
visual cortex - wildtype, neonate N15, donor1.CNhs13031.10235-104A1	31.06	0.00	0.56	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs10749.3139-67G5	31.06	8.11	1.85	1.27
bone (os femoris), neonate N20.CNhs11195.1350-25C3	31.03	0.48	6.79	0.00
visual cortex - wildtype, neonate N15, donor3.CNhs13033.10237-104A3	30.94	0.00	0.57	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs10840.3139-67G5	30.87	7.91	2.70	1.35
whole body, embryo E17.5, pool1 (internal control).CNhs11128.3139-67G5	30.69	8.01	2.44	1.22
whole body, embryo E17.5, pool1 (internal control).CNhs11072.3139-67G5	30.68	8.28	2.26	1.79
whole body, embryo E17.5, pool1 (internal control).CNhs11120.3139-67G5	30.52	8.42	1.32	0.79
whole body, embryo E17.5, pool1 (internal control).CNhs11208.3139-67G5	30.49	7.95	2.14	1.19
whole body, embryo E17.5, pool1 (internal control).CNhs11080.3139-67G5	30.46	6.60	2.45	1.27
whole body, embryo E17.5, pool1 (internal control).CNhs11096.3139-67G5	30.37	8.60	2.74	0.55
Sox2+ Supporting cells - organ of corti, pool1.CNhs12532.12157-128G6	30.14	0.00	19.15	0.00
bone (os femoris), neonate N16.CNhs11225.1525-43A6	30.03	0.88	6.85	0.22
visual cortex - wildtype, neonate N60-70, donor2.CNhs13038.10242-104A8	29.91	0.00	0.45	0.00
adrenal gland, embryo E18.CNhs11026.1262-18F5	29.84	0.00	0.90	0.00
visual cortex - wildtype, neonate N15, donor5.CNhs13820.10349-105D7	29.73	0.17	1.37	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs11024.3139-67G5	29.46	8.70	1.95	1.06
whole body, embryo E17.5, pool1 (internal control).CNhs10623.3139-67G5	28.94	7.12	2.43	1.69
kidney, neonate N25.CNhs11122.1353-25F3	28.89	0.00	3.14	0.00
kidney, neonate N30.CNhs11203.1385-42H1	28.87	0.25	5.92	0.00
forelimb, embryo E13.CNhs10589.384-1E2	28.68	1.58	3.87	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs11216.3139-67G5	28.37	6.90	3.05	1.48
visual cortex - wildtype, neonate N30, donor1.CNhs13034.10238-104A4	28.09	0.00	0.00	0.00
visual cortex - wildtype, neonate N15, donor2.CNhs13032.10236-104A2	28.08	0.46	0.46	0.46
adrenal gland, embryo E16.CNhs11004.1254-43D6	27.71	0.00	1.22	0.00
heart, neonate N03.CNhs11221.1349-25I2	27.48	0.16	0.66	0.00
heart, neonate N00.CNhs11213.639-21E3	27.44	0.12	0.70	0.00
adrenal gland, embryo E17.CNhs11043.1263-45I1	26.98	0.00	0.69	0.00
Mouse Neurons - cortical, donor1.CNhs12025.11724-123D5	26.75	0.00	1.97	0.00
lung, embryo E16.CNhs10998.458-17B6	26.52	35.91	2.58	4.69
heart, embryo E17.CNhs11025.479-18E5	26.28	0.93	0.23	0.00
heart, embryo E15.CNhs11017.431-16C8	25.97	0.00	0.00	0.00
whole body, embryo E17.5.CNhs10513.490-9F9	25.85	7.33	3.09	0.96
Mouse Neurons - cortical, donor3.CNhs12112.11647-122D9	25.24	0.00	1.68	0.00
pituitary gland, embryo E17.CNhs11039.1265-44F5	24.52	0.66	0.49	0.00
Mouse Neurons - cortical, donor2.CNhs11947.11742-123F5	24.17	0.00	2.97	0.00
heart, embryo E14.CNhs10597.403-26D4	23.91	0.00	0.71	0.00
whole body, embryo E17.CNhs10517.475-3I5	23.48	0.25	5.00	0.00
whole body, embryo E12.CNhs10587.857-27C9	23.14	0.00	10.77	0.00
whole body, embryo E14.5.CNhs10578.420-27D2	23.10	0.73	2.43	0.00
heart, embryo E18.CNhs11030.1283-20G3	23.07	2.41	0.27	0.54
pituitary gland, embryo E16.CNhs11036.449-43F6	23.01	0.54	0.36	0.00
lung, embryo E15.CNhs11020.432-17C5	22.92	6.45	1.36	0.85
Mouse Astrocytes - cerebellar, donor2.CNhs12076.11550-120C2	22.89	0.22	3.71	0.00
heart, embryo E12.CNhs11015.353-12F5	22.75	0.00	0.47	0.00
kidney, embryo E16.CNhs10584.464-22A5	22.54	0.00	0.00	0.00
lung, embryo E14.CNhs10604.404-26F8	22.33	2.61	0.49	0.33
eyeball, neonate N02.CNhs11205.1551-44G8	21.93	0.09	3.19	0.00
Mouse Neurons - ventral spinal cord, donor3.CNhs12113.11648-122E1	21.44	0.00	0.37	0.00
Mouse Neurons - dorsal spinal cord, donor3.CNhs12618.11643-122D5	21.42	0.00	1.77	0.00
epididymis and seminiferous tubule, neonate N30.CNhs11199.1387-42A2	21.02	1.12	9.83	0.00
forelimb, embryo E14.CNhs10577.413-26A8	20.82	0.66	5.26	0.00
heart, embryo E13.CNhs11013.376-3I9	20.35	0.00	0.18	0.00
Mouse Neurons - dorsal spinal cord, donor2.CNhs12635.11738-123F1	20.28	0.00	0.86	0.00
skin, neonate N00.CNhs11124.650-25G4	20.18	0.81	2.58	0.00
heart, embryo E16.CNhs11021.457-17C6	20.05	0.31	0.31	0.00
kidney, embryo E17.CNhs11028.483-18I2	19.96	0.20	0.20	0.00
kidney, embryo E18.CNhs11001.1288-20C7	19.78	0.00	0.00	0.00
heart, embryo E11.CNhs10586.331-24E9	19.68	0.00	1.04	0.00
pituitary gland, embryo E15.CNhs10592.427-16B9	19.68	0.18	0.35	0.00
adrenal gland, embryo E14.CNhs11038.406-44C5	19.43	0.00	1.04	0.00
kidney, neonate N00.CNhs11214.646-21G7	19.43	0.14	0.98	0.00
intestine, embryo E12.CNhs11019.1251-16I5	19.41	0.00	1.28	0.00
eyeball, neonate N01.CNhs11140.1532-43E7	19.35	0.00	3.59	0.00
eyeball, embryo E17.CNhs11023.1261-18D4	19.14	0.15	3.32	0.00
hippocampus, neonate N00.CNhs11228.627-43G1	18.11	0.00	2.68	0.00
kidney, embryo E15.CNhs10997.434-16F8	18.05	0.11	0.46	0.00
whole body, embryo E13.CNhs10512.372-23H2	17.93	0.34	5.46	0.00
pituitary gland, neonate N00.CNhs11190.1308-22E9	17.66	2.13	1.52	0.00
pituitary gland, embryo E12.CNhs11018.346-16E6	16.75	0.00	3.60	0.00
pituitary gland, embryo E14.CNhs11037.398-44A5	16.72	0.43	0.21	0.00
eyeball, neonate N00.CNhs11207.633-15C6	16.67	0.27	4.49	0.00
SABiosciences XpressRef Mouse Universal Total RNA, pool1.CNhs10611.10003-101A7	16.29	2.25	2.11	0.14
ovary, neonate N00.CNhs11217.1299-22I4	16.29	0.16	1.30	0.00
eyeball, adult.CNhs10484.31-12G4	15.36	0.00	1.89	0.00
pancreas, neonate N02.CNhs11139.1539-43D8	15.33	0.00	0.00	0.00
Mouse Granule cells, donor3.CNhs12108.11636-122C7	15.21	0.00	1.27	0.00
forelimb, embryo E12.CNhs10600.359-14H2	15.13	0.57	6.43	0.00
skin, adult.CNhs10492.30-1C3	13.85	5.28	1.65	0.00
neurospheres - enteric neuron derived, biol_rep1.CNhs13087.11810-124E1	13.57	0.00	17.04	0.00
bone (os femoris), adult.CNhs10483.56-12G2	13.27	0.88	1.77	0.00
lung, embryo E12.CNhs10522.354-16G2	13.07	0.19	1.14	0.00
skin, neonate N03.CNhs11215.662-22H3	13.03	1.45	2.41	0.12
neurospheres - enteric neuron derived, biol_rep2.CNhs13088.11811-124E2	12.88	0.00	22.65	0.00
pancreas, neonate N01.CNhs11138.1531-43D7	12.36	0.00	0.73	0.00
pancreas, embryo E18.CNhs10580.1535-43I7	12.30	0.00	0.31	0.00
neurospheres - enteric neuron derived, biol_rep3.CNhs13089.11812-124E3	12.28	0.00	26.07	0.00
uterus, adult pregnant day19.CNhs10497.590-15F5	12.01	0.19	0.00	0.00
Mouse Granule cells, donor2.CNhs12357.11731-123E3	11.64	0.00	0.00	0.00
eyeball, embryo E12.CNhs11016.345-16C6	11.58	0.00	2.60	0.00
testis, embryo E13.CNhs11031.389-23F5	11.21	0.00	0.30	0.00
corpus striatum, neonate N00.CNhs11226.630-43F1	11.18	1.01	1.01	0.13
submandibular gland, adult.CNhs10469.59-29C1	11.18	0.00	0.00	0.00
gonad, embryo E13.CNhs11044.1564-45I6	11.15	0.00	0.40	0.00
spleen, embryo E16.CNhs11035.461-43C1	11.14	0.62	0.83	0.00
Mouse Neurons - hippocampal, donor3.CNhs12110.11644-122D6	11.03	0.00	0.00	0.00
ovary, embryo E18.CNhs11040.505-44H7	10.68	0.36	0.00	0.00
eyeball, embryo E15.CNhs10593.426-16C9	10.62	0.00	3.06	0.00
eyeball, embryo E14.CNhs10521.399-16E2	10.58	0.00	1.84	0.00
neurospheres - sympathetic neuron derived, biol_rep2.CNhs13082.11805-124D5	10.52	0.00	11.40	0.00
spleen, embryo E18.CNhs11011.1271-21F2	10.37	0.19	0.37	0.00
Mouse Neurons - hippocampal, donor1.CNhs12133.11721-123D2	10.17	0.00	1.10	0.00
pancreas, neonate N00.CNhs11105.645-26G9	9.82	0.00	0.52	0.00
intestine, embryo E13.CNhs11010.381-16D5	9.75	0.00	1.16	0.00
epididymis, adult.CNhs10490.58-23B2	9.60	0.00	0.00	0.00
whole body, embryo E16.CNhs10514.453-14F2	9.56	5.88	2.21	0.37
skin, neonate N06.CNhs11097.693-20I5	9.55	1.67	3.70	0.12
pancreas, neonate N25.CNhs11094.1555-45E2	9.49	0.00	2.11	0.00
pancreas, neonate N16.CNhs11136.787-43B6	9.48	0.00	1.58	0.00
pituitary gland, embryo E13.CNhs11009.370-44C7	9.44	0.00	0.39	0.00
oviduct, adult pregnant day01.CNhs10500.988-6G6	9.40	0.82	0.49	0.00
ovary, adult.CNhs10507.91-2I7	9.37	0.14	0.00	0.14
pancreas, neonate N30.CNhs11182.1548-44H5	9.28	0.00	0.00	0.00
urinary bladder, adult.CNhs10481.879-12E4	9.27	0.00	1.16	0.00
epididymis and seminiferous tubule, neonate N00.CNhs11218.1310-23B1	9.17	0.00	0.31	0.00
intestine, embryo E15.CNhs10602.976-16D8	9.15	0.00	0.77	0.00
stomach, embryo E15.CNhs10603.1252-16G8	9.15	0.41	0.81	0.00
Mouse Astrocytes - hippocampus, donor2.CNhs12077.11551-120C3	9.14	0.19	4.86	0.00
whole body, embryo E14.CNhs10519.395-14B1	9.01	0.84	2.31	0.00
Mouse Microglia, donor2.CNhs12634.11736-123E8	8.84	0.00	0.38	0.00
stomach, neonate N07.CNhs11210.718-18A9	8.84	0.08	0.41	0.00
stomach, neonate N03.CNhs11193.1340-24B8	8.77	0.54	1.08	0.00
Mouse Neurons - striatal, donor2.CNhs12360.11741-123F4	8.60	0.00	1.83	0.00
Universal RNA - Mouse Normal Tissues Biochain, pool1.CNhs10613.10008-101B6	8.56	2.63	1.37	0.57
intestine, neonate N07.CNhs11095.720-20F2	8.56	0.00	0.20	0.00
skin, neonate N10.CNhs11108.762-6C4	8.21	1.48	2.30	0.16
testis, embryo E16.CNhs11033.470-26G5	8.17	0.00	0.00	0.00
testis, embryo E15.CNhs11034.443-27C5	8.11	0.00	0.00	0.00
intestine, neonate N20.CNhs11187.827-18D1	8.09	0.00	0.00	0.00
intestine, neonate N00.CNhs11126.644-26D1	8.07	0.00	0.00	0.00
spleen, neonate N10.CNhs11116.752-24D1	7.91	0.00	0.75	0.00
Mouse Neurons - hippocampal, donor2.CNhs12359.11739-123F2	7.67	0.00	1.25	0.00
Mouse Neurons - striatal, donor1.CNhs12134.11723-123D4	7.65	0.00	2.24	0.00
small intestine, neonate N16.CNhs11114.790-21I1	7.58	0.00	0.87	0.00
whole body, embryo E11.CNhs11014.324-5I8	7.58	0.31	6.33	0.00
pancreas, embryo E16.CNhs11003.460-26E5	7.54	0.00	0.19	0.00
neurospheres - sympathetic neuron derived, biol_rep3.CNhs13083.11806-124D6	7.51	0.00	16.60	0.00
testis, embryo E17.CNhs11029.486-18I5	7.49	0.13	0.39	0.00
testis, neonate N00.CNhs11189.1300-22B7	7.39	0.00	0.47	0.00
liver, neonate N06.CNhs11101.684-20A8	7.19	0.00	0.00	0.00
pancreas, embryo E14.CNhs11012.405-44F4	7.04	0.00	0.73	0.00
placenta, adult pregnant day10.CNhs10472.539-13I7	6.81	0.00	0.00	0.00
liver, neonate N07.CNhs11103.716-20H2	6.70	10.05	1.12	2.23
testis, neonate N30.CNhs11130.1391-42E2	6.62	0.00	0.00	0.00
stomach, embryo E16.CNhs11022.459-17D4	6.59	0.00	0.32	0.00
spleen, adult.CNhs10465.25-2G2	6.49	0.00	1.37	0.00
intestine, neonate N01.CNhs11192.1322-23E9	6.42	0.16	0.82	0.00
mammary gland, adult pregnant day19.CNhs10476.588-5H2	6.35	0.00	0.28	0.00
Mouse Granule cells, donor1.CNhs12131.11713-123C3	6.27	0.00	1.42	0.00
thymus, embryo E15.CNhs11005.430-45I2	6.27	0.10	8.01	0.00
testis, embryo E18.CNhs11027.503-18G5	6.25	0.00	0.17	0.00
thymus, embryo E14.CNhs11041.402-44I4	6.08	0.00	8.11	0.20
kidney, embryo E14.CNhs10606.411-4I9	6.07	0.00	0.38	0.00
neurospheres - sympathetic neuron derived, biol_rep1.CNhs13081.11804-124D4	6.07	0.00	15.38	0.00
stomach, embryo E17.CNhs11006.1035-18D5	6.06	0.00	0.42	0.00
stomach, neonate N25.CNhs11104.1355-25E4	6.02	0.26	0.79	0.00
stomach, neonate N30.CNhs11134.1386-42I1	5.96	0.00	0.39	0.00
liver, neonate N10.CNhs11115.751-24B9	5.93	0.00	0.00	0.00
Mouse Astrocytes, donor3.CNhs12107.11633-122C4	5.75	0.00	0.00	0.00
Mouse Neurons - striatal, donor3.CNhs12111.11646-122D8	5.73	0.00	1.56	0.00
pancreas, embryo E17.CNhs10599.1558-45G3	5.61	0.00	0.30	0.00
spleen, neonate N20.CNhs11112.824-19H1	5.47	0.27	0.96	0.00
stomach, embryo E18.CNhs10999.1286-20C6	5.46	0.22	0.22	0.00
pancreas, embryo E15.CNhs11042.1556-45F2	5.44	0.00	0.30	0.00
pancreas, adult.CNhs10486.34-16E4	5.31	0.00	1.33	0.00
liver, embryo E18.CNhs10579.499-43G4	5.18	4.89	0.00	1.15
intestine, neonate N10.CNhs11098.755-23A5	5.07	0.00	0.58	0.00
thymus, adult.CNhs10471.38-12B5	5.06	0.32	2.21	0.00
intestine, neonate N06.CNhs11102.688-20B8	5.03	0.00	0.00	0.00
intestine, embryo E18.CNhs10526.1289-20F7	4.95	0.00	0.00	0.00
intestine, embryo E16.CNhs10585.463-22H4	4.84	0.00	0.20	0.00
Mouse Astrocytes - hippocampus, donor1.CNhs12129.11709-123B8	4.61	1.32	4.61	0.00
testis, neonate N07.CNhs11222.726-26I4	4.56	0.00	0.39	0.00
amnion, adult pregnant day17.5.CNhs10488.583-22A8	4.45	0.25	0.49	0.00
intestine, embryo E17.CNhs10582.482-18D3	4.45	0.00	1.11	0.00
stomach, embryo E12.CNhs10588.356-43E3	4.43	0.00	0.63	0.00
spleen, neonate N25.CNhs11099.1354-25G3	4.12	0.00	1.60	0.00
liver, neonate N00.CNhs11117.641-24F4	4.05	0.00	0.32	0.00
uterus, adult.CNhs10509.92-27E5	3.85	0.18	0.00	0.00
stomach, adult.CNhs10503.33-1H6	3.82	0.00	0.95	0.00
neurospheres - parasympathetic neuron derived, biol_rep2.CNhs13085.11808-124D8	3.79	0.00	5.79	0.00
Mouse Astrocytes, donor2.CNhs12078.11552-120C4	3.78	0.00	0.70	0.00
Mouse Cardiac Myocytes, donor2.CNhs12356.11729-123E1	3.72	0.86	10.03	0.00
Lgr5 positive intestinal stem cells, pool2.CNhs12556.12229-129F6	3.66	0.00	0.00	0.00
Mouse Microglia, donor1.CNhs12629.11718-123C8	3.60	0.00	0.00	0.00
placenta, adult pregnant day17.CNhs10464.577-18G3	3.60	0.64	3.39	0.00
liver, embryo E12.CNhs10601.355-15F8	3.50	0.00	0.67	0.00
mammary gland, adult lactating day02.CNhs10480.595-22B6	3.44	0.49	0.49	0.00
intestine, neonate N30.CNhs11131.1384-42G1	3.39	0.00	0.20	0.00
colon, adult.CNhs10468.36-18H7	3.32	0.00	0.00	0.00
vagina, adult.CNhs10502.89-27D5	3.22	0.00	0.21	0.00
thymus, embryo E18.CNhs10595.1273-19G4	3.18	0.00	2.19	0.00
Mouse Cardiac Myocytes, donor3.CNhs12353.11634-122C5	3.09	0.52	5.67	0.00
liver, neonate N25.CNhs11198.1368-26H1	3.05	0.00	0.18	0.00
intestine, neonate N25.CNhs11121.1352-25E3	3.03	0.00	0.43	0.00
thymus, embryo E16.CNhs11002.456-26C5	2.99	0.00	5.20	0.00
liver, neonate N30.CNhs11106.1382-42D1	2.89	0.00	0.00	0.00
neurospheres - parasympathetic neuron derived, biol_rep1.CNhs13084.11807-124D7	2.87	0.00	8.84	0.00
liver, embryo E13.CNhs10524.378-3H6	2.75	0.00	0.39	0.00
liver, neonate N03.CNhs11123.1345-25G2	2.75	0.00	0.00	0.00
testis, neonate N10.CNhs11204.763-44D9	2.73	0.00	0.31	0.00
thymus, embryo E17.CNhs10581.478-18C1	2.69	0.00	5.19	0.00
Lgr5 positive intestinal stem cells, pool3.CNhs12557.12230-129F7	2.65	0.00	0.00	0.00
Lgr5 positive intestinal stem cells, pool1.CNhs12555.12228-129F5	2.60	0.29	0.00	0.00
accessory axillary lymph node, adult.CNhs10475.1063-29H9	2.59	0.00	0.26	0.00
liver, embryo E17.CNhs10510.481-18A3	2.55	1.78	0.25	0.00
liver, embryo E15.CNhs10520.433-16D7	2.43	0.00	0.00	0.00
Mouse Cardiac Myocytes, donor1.CNhs12355.11711-123C1	2.32	0.00	11.58	0.00
thymus, neonate N06.CNhs11197.681-26C4	2.22	0.00	1.72	0.00
liver, embryo E16.CNhs10523.462-17F5	2.17	0.00	0.00	0.00
testis, neonate N20.CNhs11110.839-18H3	2.17	0.00	0.00	0.00
forelimb, embryo E11.CNhs10596.335-25E2	2.16	0.00	2.37	0.00
thymus, neonate N10.CNhs11194.748-24E4	2.12	0.00	1.21	0.00
thymus, neonate N03.CNhs11137.2104-43C7	2.07	0.15	2.95	0.00
neurospheres - parasympathetic neuron derived, biol_rep3.CNhs13086.11809-124D9	1.98	0.00	4.53	0.00
thymus, neonate N02.CNhs11181.1541-43F8	1.92	0.00	1.80	0.00
cecum, adult.CNhs10467.37-13H4	1.86	0.00	0.00	0.00
liver, adult pregnant day01.CNhs10466.508-5B2	1.78	0.00	0.00	0.00
thymus, neonate N07.CNhs11211.713-19D3	1.75	0.08	1.14	0.00
thymus, neonate N20.CNhs11186.820-7A2	1.75	0.00	0.78	0.00
thymus, neonate N25.CNhs11125.1362-25G7	1.73	0.00	0.58	0.00
Mouse Schwann, donor2.CNhs12573.11746-123F9	1.59	0.00	2.12	0.00
intestine, adult.CNhs10496.178-9A3	1.59	0.00	0.26	0.00
intestinal mucosa, adult.CNhs10506.860-29I3	1.32	0.00	0.00	0.00
thymus, neonate N30.CNhs11132.1393-42G2	1.29	0.00	1.05	0.00
liver, neonate N20.CNhs11220.823-25A3	1.26	0.00	0.00	0.00
CD41+ megakaryocyte cancer, donor2.CNhs13213.11776-124A3	1.21	0.00	0.00	0.00
Mouse hepatic Stellate Cells (lipocyte), donor1.CNhs13196.11825-124F7	0.86	0.00	0.00	0.00
Mouse Astrocytes - cerebellar, donor1.CNhs13077.11708-123B7	0.78	0.00	0.00	0.00
Mouse Schwann, donor1.CNhs12507.11728-123D9	0.76	0.08	6.06	0.08
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep2.CNhs12668.13129-140G6	0.62	0.00	0.00	0.00
CD41+ megakaryocyte control, donor1.CNhs13212.11775-124A2	0.47	0.00	0.00	0.00
Mouse hepatocyte, donor8.CNhs13091.11824-124F6	0.45	0.00	0.00	0.00
liver, embryo E14.CNhs10594.409-16E1	0.45	0.00	0.00	0.00
trophoblast stem cell line B1 differentiation, day00, biol_rep1.CNhs13526.13297-142H3	0.44	0.00	0.00	0.00
CD41+ megakaryocyte cancer, donor1.CNhs13079.11774-124A1	0.33	0.00	0.00	0.00
GP2+ M cell, pool3.CNhs13240.11847-124I2	0.22	0.00	0.00	0.00
Ileum epithelium, treated with RANKL, day03, pool3.CNhs13234.10260-104C8	0.22	0.00	0.00	0.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13236.11852-124I7	0.17	0.00	0.00	0.00
trophoblast stem cell line Rybp differentiation, day00, biol_rep1.CNhs13519.13290-142G5	0.17	0.00	0.00	0.00
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J).CNhs13219.11816-124E7	0.14	0.00	0.00	0.00
trophoblast stem cell line R1AB differentiation, day00, biol_rep1.CNhs13481.13283-142F7	0.09	0.00	0.00	0.00
Atoh1+ Inner ear hair cells - organ of corti, pool1.CNhs12533.12158-128G7	0.00	0.00	0.00	0.00
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13242.11850-124I5	0.00	0.00	0.00	0.00
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13233.11851-124I6	0.00	0.00	0.00	0.00
CD326+ enterocyte, pool1.CNhs13542.11848-124I3	0.00	0.00	0.00	0.00
CD326+ enterocyte, pool2.CNhs13197.11849-124I4	0.00	0.00	0.00	0.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13210.11853-124I8	0.00	0.00	0.00	0.00
CD4+CD25+ regulatory T cells, pool2 (Balb_cAJcl).CNhs13221.11818-124E9	0.00	0.00	0.00	0.00
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl).CNhs13226.11820-124F2	0.00	0.00	0.00	0.00
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J).CNhs13218.11815-124E6	0.00	0.00	0.00	0.00
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl).CNhs13225.11819-124F1	0.00	0.00	0.00	0.00
CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J).CNhs13217.11813-124E4	0.00	0.00	0.00	0.00
CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl).CNhs13220.11817-124E8	0.00	0.00	0.00	0.00
CD41+ megakaryocyte cancer, donor3.CNhs13506.11778-124A5	0.00	0.00	0.00	0.00
CD41+ megakaryocyte control, donor2.CNhs13214.11777-124A4	0.00	0.00	0.00	0.00
CD41+ megakaryocyte control, donor3.CNhs13201.11779-124A6	0.00	0.00	0.00	0.00
EBF KO HPCs induced to T cell, 00hr00min, biol_rep1.CNhs11058.12972-138H2	0.00	0.00	0.00	0.00
EBF KO HPCs induced to T cell, 00hr00min, biol_rep2.CNhs12980.12988-138I9	0.00	0.00	0.00	0.00
Follicle Associated Epithelium, pool2.CNhs13211.10262-104D1	0.00	0.00	0.00	0.00
Follicle Associated Epithelium, pool3.CNhs13200.10263-104D2	0.00	0.00	0.00	0.00
GP2+ M cell, pool1.CNhs13228.11845-124H9	0.00	0.00	0.00	0.00
GP2+ M cell, pool2.CNhs13231.11846-124I1	0.00	0.00	0.00	0.00
Ileum epithelium, pool1.CNhs13199.10252-104B9	0.00	0.00	0.00	0.00
Ileum epithelium, pool2.CNhs13232.10253-104C1	0.00	0.00	0.00	0.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep1.CNhs12449.13063-139I3	0.00	0.00	0.00	0.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep3.CNhs12770.13195-141E9	0.00	0.00	0.00	0.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL).CNhs12539.12159-128G8	0.00	0.00	0.00	0.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL).CNhs12198.12161-128H1	0.00	0.00	0.00	0.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL).CNhs12542.12163-128H3	0.00	0.00	0.00	0.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor1 (4,5,6PBS).CNhs12540.12160-128G9	0.00	0.00	0.00	0.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor2 (0127 PBS).CNhs12541.12162-128H2	0.00	0.00	0.00	0.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor3 (0128 PBS).CNhs12543.12164-128H4	0.00	0.00	0.00	0.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep1.CNhs11055.11484-119D8	0.00	0.38	0.13	0.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep2.CNhs11056.11485-119D9	0.00	0.10	0.00	0.00
Mouse Aortic Smooth Muscle cells, donor1.CNhs11297.11299-117B3	0.00	0.00	0.00	0.00
Mouse CD19+ B Cells, donor1.CNhs13531.11856-125A2	0.00	0.00	0.00	0.00
Mouse CD4+ T Cells, donor1.CNhs13509.11854-124I9	0.00	0.00	0.00	0.00
Mouse CD8+ T Cells, donor1.CNhs13511.11855-125A1	0.00	0.00	0.00	0.00
Mouse Meningeal cells, donor1.CNhs12132.11716-123C6	0.00	0.00	0.00	0.00
Mouse Meningeal cells, donor3.CNhs12109.11639-122D1	0.00	0.00	0.00	0.00
Mouse Mesenchymal stem cells - bone marrow derived, donor1.CNhs12628.11717-123C7	0.00	0.00	0.00	0.00
Mouse Mesenchymal stem cells - bone marrow derived, donor2.CNhs12633.11735-123E7	0.00	0.00	0.00	0.00
Mouse Mesenchymal stem cells - bone marrow derived, donor3.CNhs12616.11640-122D2	0.00	0.00	0.00	0.00
Mouse hepatocyte, donor1.CNhs13078.11714-123C4	0.00	0.00	0.00	0.00
Mouse hepatocyte, donor3.CNhs12615.11637-122C8	0.00	0.00	0.00	0.00
Mouse hepatocyte, donor6.CNhs13090.11822-124F4	0.00	0.00	0.00	0.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep1 (000hC4).CNhs11939.12338-130I7	0.00	0.17	0.00	0.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep2 (000hC5).CNhs13275.12460-132E3	0.00	0.26	0.00	0.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep3 (000hC6).CNhs13324.12582-133I8	0.00	0.35	0.00	0.00
TSt-4/DLL1 feeder cells, biol_rep1.CNhs13407.12971-138H1	0.00	6.42	3.85	0.00
TSt-4/DLL1 feeder cells, biol_rep2.CNhs13408.12987-138I8	0.00	5.10	5.10	2.55
TSt-4/DLL1 feeder cells, biol_rep3.CNhs13409.13003-139B6	0.00	0.00	0.00	0.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep1.CNhs13739.13367-143G1	0.00	0.00	0.00	0.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep2.CNhs13740.13368-143G2	0.00	0.00	0.00	0.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep3.CNhs13741.13369-143G3	0.00	0.00	0.00	0.00
common myeloid progenitor CMP, biol_rep1.CNhs12550.12122-128C7	0.00	0.00	0.00	0.00
common myeloid progenitor CMP, biol_rep2.CNhs12203.12125-128D1	0.00	0.00	0.00	0.00
common myeloid progenitor CMP, biol_rep3.CNhs12551.12128-128D4	0.00	0.00	0.00	0.00
granulocyte macrophage progenitor GMP, biol_rep1.CNhs12206.12123-128C8	0.00	0.00	0.00	0.00
granulocyte macrophage progenitor GMP, biol_rep2.CNhs12202.12126-128D2	0.00	0.00	0.00	0.00
granulocyte macrophage progenitor GMP, biol_rep3.CNhs11928.12129-128D5	0.00	0.00	0.00	0.00
macrophage, bone marrow derived, pool1.CNhs11457.3560-170A1	0.00	0.00	0.00	0.00
macrophage, bone marrow derived, pool2.CNhs11532.3632-171A1	0.00	0.00	0.00	0.00
mouse fibroblast cell line: CRL-1658 NIH/3T3.CNhs11093.1830-49C7	0.00	0.00	0.00	0.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1.CNhs12534.12121-128C6	0.00	0.00	0.00	0.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2.CNhs12535.12124-128C9	0.00	0.00	0.00	0.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3.CNhs12536.12127-128D3	0.00	0.00	0.00	0.00
testis, adult.CNhs10504.57-7G5	0.00	0.00	0.00	0.00

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p1@Limch1
p2@Limch1
p3@Limch1
p5@Limch1

• Click each plot point to find sample in table

ENCODE TF ChIP-seq peak enrichment analysis Analyst: Erik Arner <br>Summary: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><br><br>link to source dataset.<br>data

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No analysis results for this cluster

Details<b>Summary:</b>It includes sequences from the international sequence collaboration, Swiss-Prot, and RefSeq. The RefSeq subset of this file is also available as gene2refseq.<br><br>links to source dataset.<br>human <br>mouse

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GeneID:	77569
LocusTag:	-
chromosome:	5
map location:	5 C3.1, 5, 5 C3.1;;5
type of gene:	protein-coding
Symbol from nomenclature authority:	Limch1
Full name from nomenclature authority:	LIM and calponin homology domains 1
Nomenclature status:	O
Other designations:	LIM and calponin homology domains-containing protein 1
Modification date:	07.01.2012