MacroAPE 1083:HMGA2 f1

Full Name: HMGA2_f1

Motif matrix

PO A C G T 1 71.751724137931 1.2413793103448247 1.2413793103448247 1.2413793103448247 2 54.62068965517242 0.0 0.0 20.85517241379316 3 11.917241379310322 0.0 0.0 63.55862068965518 4 44.6896551724138 0.0 0.0 30.78620689655177 5 39.72413793103453 1.9862068965517228 0.9931034482758614 32.77241379310348 6 12.910344827586252 20.85517241379316 8.93793103448276 32.77241379310348 7 0.0 41.71034482758624 29.793103448275918 3.972413793103453 8 1.9862068965517228 24.827586206896573 46.67586206896551 1.9862068965517228 9 0.0 37.73793103448283 32.77241379310348 4.965517241379315 10 1.9862068965517228 31.779310344827625 40.71724137931039 0.9931034482758614 11 71.50344827586208 0.0 2.9793103448275917 0.9931034482758614 12 59.58620689655176 0.9931034482758614 0.0 14.896551724137959 13 1.9862068965517228 0.9931034482758614 0.0 72.49655172413793 14 59.58620689655176 0.0 0.9931034482758614 14.896551724137959 15 1.4896551724137959 1.4896551724137959 1.4896551724137959 71.00689655172415

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon

TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya

Target_ID	Optimal_offset	p-value	E-value	q-value	Overlap	Query consensus	Target consensus	Orientation
Pax4#MA0068.1	1	0.00567311	2.7004	1	15	AATAATCGCGAATAT	GAAAAATTTCCCATACTCCACTCCCCCCCC	+
RELA#MA0107.1	-7	0.0107127	5.09926	1	8	AATAATCGCGAATAT	GGGAATTTCC	+
ARO80#MA0273.1	3	0.0113048	5.38108	1	15	AATAATCGCGAATAT	GATAATTCTCGGCAAGTATGT	+
YDR520C#MA0422.1	-5	0.0120219	5.72242	1	10	AATAATCGCGAATAT	CCGGAGATAA	+
TEC1#MA0406.1	-7	0.0148021	7.04581	1	8	AATAATCGCGAATAT	GGGAATGT	-
Cebpa#MA0102.1	-4	0.0169136	8.05087	1	11	AATAATCGCGAATAT	TTTCGCAATCTT	+