NonredundantMotifs:175

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

• Name :non-redundant175
• db :SWISSREGULON
• Id :PAX8.p2
• name :PAX8
• score :0.11612505426120512
  
• External refs:

EntrezGene:7849
UniProt:7849

• Internal refs:

EntrezGene:7849

Motif matrix

P0 A C G T 1 26.356958 1.843132 5.774665 19.352389 2 4.343436 27.139605 14.620182 7.223921 3 39.164879 4.986899 0.783074 8.392292 4 3.709227 17.715424 19.696678 12.205815 5 5.100757 13.464341 0.342207 34.419839 6 10.314864 21.39085 7.767938 13.853492 7 28.997275 7.044427 5.580705 11.704737 8 8.634523 5.082359 1.236371 38.373891 9 1.345151 4.546671 43.719455 3.715867 10 13.595815 30.123458 6.979171 2.6287 11 25.660878 0.980055 25.637755 1.048456 12 0.553636 1.574121 1.249371 49.950016 13 0.925279 0 50.012949 2.388916 14 31.431639 2.898633 18.545691 0.451181 15 20.290425 4.284044 24.373452 4.379223 16 13.481204 10.911444 8.091109 20.843387 17 11.18345 12.534003 6.086029 23.523662 18 19.40033 14.342068 13.879891 5.704855