NonredundantMotifs:54

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

• Name :non-redundant54
• db :SWISSREGULON
• Id :POU5F1_SOX2(dimer).p2
• name :POU5F1_SOX2(dimer)
• score :0.08598973982506294
  
• External refs:

EntrezGene:POU5F1_SOX2(dimer)
UniProt:POU5F1_SOX2(dimer)

• Internal refs:

EntrezGene:POU5F1_SOX2(dimer)

Motif matrix
PO A C G T 01 18 44 2 44 02 58 1 3 46 03 0 2 4 102 04 12 0 3 93 05 12 30 58 8 06 33 2 3 70 07 32 30 10 36 08 96 0 4 8 09 3 1 0 104 10 1 0 96 11 11 4 69 9 26 12 86 2 0 20 13 77 3 21 7 14 98 4 6 0 15 17 16 10 65