UBERON:0000014
From FANTOM5_SSTAR
Name: | zone of skin | |
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Namespace: | FANTOM | |
Definition: | "A sub-region of the skin. Note the distinct between the entire skin of the body, of which there is only 1 in an organism, and zones of skin, of which there can be many. Examples: skin of knee" [GOC:cjm, Wikipedia:Skin] | |
Xrefs: |
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Synonyms: |
"portion of skin" EXACT [] "region of skin" EXACT [] "skin" EXACT [MA:0000151] "skin region" EXACT [] "skin zone" EXACT [] | |
Comments: | we assume that mouse, HOG and GAID all mean zone of skin when they say skin. We also choose skin as an exact synonym, as it is more intuitive |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000064(organ part),UBERON:0004121(ectoderm-derived structure) |
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part_of: | UBERON:0002097(skin of body) |
Children
is a: | UBERON:0001419 (skin of limb),FF:0011174 (Skin - armpit hair follicle),FF:0011178 (Skin - torso),FF:0103765 (dermatofibroma cell line),FF:10702-109G9 (basal cell carcinoma cell line:TE 354.T),FF:10713-109I2 (),FF:10791-110H8 (keratoacanthoma cell line:HKA-1) |
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derives from: | FF:0010065 (human skin - fetal sample),FF:0010074 (human skin - adult sample),FF:0011308 (mouse skin- adult sample),FF:0011397 (mouse skin- neonate N00 sample),FF:0011400 (mouse skin- neonate N03 sample),FF:0011406 (mouse skin- neonate N06 sample),FF:0011421 (mouse skin- neonate N10 sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10065-101I2 (skin, fetal, donor1)
- 10074-102A2 (skin, adult, donor1)
- 10283-104F4
- 10285-104F6
- 10286-104F7 (Skin - palm, donor1)
- 10287-104F8
- 10311-104I5
- 10313-104I7
- 10314-104I8
- 10315-104I9
... further results Mouse (Mus musculus)
- 10065-101I2 (skin, fetal, donor1)
- 10074-102A2 (skin, adult, donor1)
- 10283-104F4
- 10285-104F6
- 10286-104F7 (Skin - palm, donor1)
- 10287-104F8
- 10311-104I5
- 10313-104I7
- 10314-104I8
- 10315-104I9
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000014 (zone of skin), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data