UBERON:0000074
From FANTOM5_SSTAR
Name: | renal glomerulus | |
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Namespace: | FANTOM | |
Definition: | "A capillary tuft which forms a close network with the visceral epithelium (podocytes) and the mesangium to form the filtration barrier and is surrounded by Bowman's capsule in nephrons of the vertebrate kidney[GO]." [MP:0005325, Wikipedia:Glomerulus] | |
Xrefs: |
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Synonyms: |
"glomerular capillary tuft" RELATED [ZFA:0001288] "glomerular tuft" RELATED [] "glomerulus" BROAD [] "glomerulus renis" RELATED LATIN [Wikipedia:Glomerulus] "malphigian glomerulus" RELATED [BTO:0000530] "renal corpuscle" RELATED [] | |
Comments: | ZFA - The multi-tissue structure where the glomerular basement membrane supported by mesonephric podocytes filters blood from the glomerular capillaries. TODO - split glomerulus and glomerular tuft? DONE. GUDMAP: 'Together, the Bowman遯カ蜀ア capsule and the glomerulus comprise the definitive renal corpuscle.' - here the glomerulus is part of the capsule? | |
Subset: | vertebrate_core | |
Created by: | Melissa Haendel | |
Creation date: | 2009-06-18T09:26:37Z |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000064(organ part),UBERON:0004120(mesoderm-derived structure),UBERON:0006554(urinary system structure) |
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develops_from: | UBERON:0005749(glomerular tuft) |
part_of: | UBERON:0001229(renal corpuscle) |
Children
part of: | CL:0002188 (glomerular endothelial cell),UBERON:0002319 (mesangium),CL:1000746 (glomerular cell) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11514-119H2 (Renal Glomerular Endothelial Cells, donor1)
- 11518-119H6 (Renal Mesangial Cells, donor1)
- 11590-120G6 (Alveolar Epithelial Cells, donor2)
- 11594-120H1 (Renal Glomerular Endothelial Cells, donor2)
- 11598-120H5 (Renal Mesangial Cells, donor2)
- 11675-122H1 (Renal Glomerular Endothelial Cells, donor3)
- 11679-122H5 (Renal Mesangial Cells, donor3)
- 11783-124B1 (Renal Glomerular Endothelial Cells, donor4)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000074 (renal glomerulus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
Property "Property value" (as page type) with input value "UBPROP:0000001 "A tuft of capillaries found in a Bowman's capsule in which waste products are filtered from the blood and urine formation is initiated.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.