UBERON:0000996
From FANTOM5_SSTAR
Name: | vagina | |
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Namespace: | FANTOM | |
Definition: | "a fibromuscular tubular tract leading from the uterus to the exterior of the body in female placental mammals and marsupials, or to the cloaca in female birds, monotremes, and some reptiles[WP]. Organ with organ cavity which connects the cervical canal of uterus to the vestibule of vagina.[FMA]" [FMA:19949, Wikipedia:Vagina] | |
Xrefs: |
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Comments: | Taxon notes (via vHOG): "The distal end of the oviducts differentiates as a vagina in Metatheria and Eutheria." Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective, Third Edition (2001) Orlando Fla.: Harcourt College Publishers, p.688 | |
Alt_id: | UBERON:FBbt_00004925-FMA_19949-MA_0000394-MIAA_0000128 | |
Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0013515(subdivision of uterine tube) |
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develops_from: | UBERON:0000164(primitive urogenital sinus) |
part_of: | UBERON:0003975(internal female genitalia) |
Children
is a: | FF:0102936 (vaginal cell line) |
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derives from: | FF:0010204 (human vagina - adult sample),FF:0011438 (mouse vagina- adult sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10204-103F6 (vagina, adult)
- 10602-108E8
- 89-27D5 (vagina, adult)
Mouse (Mus musculus)
- 10204-103F6 (vagina, adult)
- 10602-108E8
- 89-27D5 (vagina, adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000996 (vagina), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data