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UBERON:0000996

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Name:vagina
Namespace:FANTOM
Definition:"a fibromuscular tubular tract leading from the uterus to the exterior of the body in female placental mammals and marsupials, or to the cloaca in female birds, monotremes, and some reptiles[WP]. Organ with organ cavity which connects the cervical canal of uterus to the vestibule of vagina.[FMA]" [FMA:19949, Wikipedia:Vagina]
Xrefs:
links:

BTO:0000243
EFO:0000976
EMAPA:18986
EV:0100117
FMA:19949
GAID:381
galen:Vagina
[1]
[2]
MA:0000394
MAT:0000128
MESH:A.05.360.319.779
MIAA:0000128
ncithesaurus:Vagina
OpenCyc:Mx4rvVj1B5wpEbGdrcN5Y29ycA
SCTID:181441005

VHOG:0001138
Comments:Taxon notes (via vHOG): "The distal end of the oviducts differentiates as a vagina in Metatheria and Eutheria." Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective, Third Edition (2001) Orlando Fla.: Harcourt College Publishers, p.688
Alt_id: UBERON:FBbt_00004925-FMA_19949-MA_0000394-MIAA_0000128
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0013515(subdivision of uterine tube)
develops_from:UBERON:0000164(primitive urogenital sinus)
part_of:UBERON:0003975(internal female genitalia)



Children

is a:FF:0102936 (vaginal cell line)
derives from:FF:0010204 (human vagina - adult sample),FF:0011438 (mouse vagina- adult sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000996 (vagina), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data