Personal tools

UBERON:0001441

From FANTOM5_SSTAR

Jump to: navigation, search

Name:hindlimb skeleton
Namespace:FANTOM
Definition:"The collection of all skeletal elements in an hindlimb region." [UBERON:cjm]
Xrefs:
links:

AAO:0000217
EHDAA2:0002226
FMA:24144
OpenCyc:Mx4rvZcKkZwpEbGdrcN5Y29ycA
VHOG:0001255
VSAO:0000152

XAO:0003062
Synonyms: "bones of lower limb" EXACT []
"hind limb skeleton" EXACT [XAO:0003062]
"hindlimb skeleton" EXACT [VHOG:0001255]
"lower limb skeleton" EXACT []
"ossa membri inferioris" EXACT [FMA:24140, FMA:TA]
"set of bones of lower limb" EXACT []
"skeleton of lower limb" EXACT [FMA:24140]
Comments:TOOD - find a home for: FMA:24140
Alt_id: UBERON:FMA_24140-MA_0000670
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0004381(skeleton of limb),UBERON:0007273(pelvic appendage skeleton)
part_of:UBERON:0002103(hindlimb),UBERON:0012476(skeleton of pelvic complex)



Children

part of:UBERON:0000981 (femur),UBERON:0003464 (hindlimb bone),UBERON:0010885 (hindlimb cartilage element),UBERON:0010886 (hindlimb bone pre-cartilage condensation),UBERON:0015022 (hindlimb endochondral element),UBERON:0015052 (femur endochondral element)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001441 (hindlimb skeleton), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data











Property "Property value" (as page type) with input value "UBPROP:0000001 "Skeletal structure of the paired, posterior appendages.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship type change: differentiates_from lateral plate mesoderm (AAO:0010574) CHANGED TO: develops_from lateral plate mesoderm (UBERON:0003081)[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.