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UBERON:0001758

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Name:periodontium
Namespace:FANTOM
Definition:"The tissues that invest or help to invest and support the teeth, including the periodontal ligament, gingivae, cementum, and alveolar and supporting bone[BTO]." [BTO:0001021, Wikipedia:Periodontium]
Xrefs:
links:

BTO:0001021
FMA:56665
GAID:216
[1]
MESH:A.14.254.646

ncithesaurus:Periodontium
Synonyms: "paradentium" RELATED [MESH:A.14.254.646]
"periodontal ligament" RELATED INCONSISTENT [FMA:56665]
"periodontal membrane" RELATED [MA:0002467]
"tooth supporting structure" RELATED [MESH:A.14.254.646]
Comments:note FMA treats periodontium and periodontal ligament as the same
Alt_id: UBERON:FMA_56665-MA_0002467

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000479(tissue)
part_of:UBERON:0003672(dentition)



Children

part of:CL:0002556 (fibroblast of periodontium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

  • 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
  • 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
  • 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
  • 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
  • 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))
  • 11395-118C9 (Fibroblast - Periodontal Ligament, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001758 (periodontium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data