UBERON:0001849

Name:	membranous labyrinth
Namespace:	FANTOM
Definition:	"Organ with organ cavity which consists of the vestibular labyrinth and the cochlear labyrinth. Examples: There are only two membranous labyrinths, the right and the left.[FMA]" [FMA:FMA, Wikipedia:Membranous_labyrinth]
Xrefs:	Expandlinks: AAO:0011060 EHDAA:4698 EMAPA:17815 EV:0100367 FMA:61022 [ Gray924.png] [ 200px-Gray924.png] MA:0000242 ncithesaurus:Membranous_Labyrinth SCTID:263790009 VHOG:0000729 XAO:0000194
Synonyms:	"labyrinthus membranaceus" RELATED LATIN [Wikipedia:Membranous_labyrinth]
Comments:	inner ear has parts membranous and osseuous/bony labyrinth. it's not clear where the edinburgh terms 'labyrinth' belong, we place them here for now
Alt_id:	UBERON:FMA_61022-MA_0000242-XAO_0000194
Subset:	organ_slim uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

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Parents

is_a:	UBERON:0000062(organ),UBERON:0004121(ectoderm-derived structure),UBERON:0010314(structure with developmental contribution from neural crest)
develops_from:	UBERON:0005641(otocyst epithelium)
part_of:	UBERON:0001846(internal ear)

Children

part of:	UBERON:0002499 (cochlear labyrinth)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

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Mouse (Mus musculus)

• 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
• 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
• 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
• 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
• 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
• 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)

Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001849 (membranous labyrinth), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

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Search:

P-value	FFCP	Short description

P-value	FFCP	Short description
1.87e-86	FFCP PHASE2:Mm9::chr9:42206730..42206739,-	p@chr9:42206730..42206739, -
1.87e-86	FFCP PHASE1:Mm9::chr15:85334335..85334353,+	p@chr15:85334335..85334353, +
1.87e-86	FFCP PHASE1:Mm9::chr10:107349418..107349423,-	p5@Otogl
1.87e-86	FFCP PHASE2:Mm9::chr8:125802236..125802251,-	p3@Fanca
1.87e-86	FFCP PHASE1:Mm9::chr12:109905399..109905416,+	p@chr12:109905399..109905416, +
1.87e-86	FFCP PHASE1:Mm9::chr10:80806047..80806059,-	p4@Gipc3
1.87e-86	FFCP PHASE2:Mm9::chr3:35012397..35012405,+	p@chr3:35012397..35012405, +
1.87e-86	FFCP PHASE2:Mm9::chr4:115556972..115556979,+	p3@Kncn
1.87e-86	FFCP PHASE2:Mm9::chr17:13983102..13983126,+	p@chr17:13983102..13983126, +
1.87e-86	FFCP PHASE1:Mm9::chr9:42207852..42207876,-	p2@Tecta
1.87e-86	FFCP PHASE1:Mm9::chr7:29733825..29733837,-	p@chr7:29733825..29733837, -
1.87e-86	FFCP PHASE1:Mm9::chr1:93235228..93235249,+	p@chr1:93235228..93235249, +
1.87e-86	FFCP PHASE2:Mm9::chr15:85334335..85334353,+	p@chr15:85334335..85334353, +
1.87e-86	FFCP PHASE2:Mm9::chr6:113251614..113251623,+	p@chr6:113251614..113251623, +
1.87e-86	FFCP PHASE2:Mm9::chr13:78257454..78257465,+	p@chr13:78257454..78257465, +
1.87e-86	FFCP PHASE2:Mm9::chr13:48087761..48087775,-	p@chr13:48087761..48087775, -
1.87e-86	FFCP PHASE1:Mm9::chr7:109052262..109052291,-	p1@Tomt
1.87e-86	FFCP PHASE1:Mm9::chr2:152453066..152453075,-	p@chr2:152453066..152453075, -
1.87e-86	FFCP PHASE2:Mm9::chr3:69811606..69811616,+	p2@Otol1
1.87e-86	FFCP PHASE1:Mm9::chr5:28035962..28035983,+	p@chr5:28035962..28035983, +
1.87e-86	FFCP PHASE1:Mm9::chr4:101908153..101908163,+	p@chr4:101908153..101908163, +
1.87e-86	FFCP PHASE2:Mm9::chr18:81327205..81327211,+	p@chr18:81327205..81327211, +
1.87e-86	FFCP PHASE2:Mm9::chr11:11599532..11599539,-	p@chr11:11599532..11599539, -
1.87e-86	FFCP PHASE2:Mm9::chr12:77084875..77084885,+	p@chr12:77084875..77084885, +
1.87e-86	FFCP PHASE1:Mm9::chr9:42206730..42206739,-	p@chr9:42206730..42206739, -
1.87e-86	FFCP PHASE1:Mm9::chr1:63733478..63733491,-	p1@Dytn
1.87e-86	FFCP PHASE2:Mm9::chr1:93218682..93218691,+	p2@Espnl
1.87e-86	FFCP PHASE2:Mm9::chr11:4689776..4689785,-	p@chr11:4689776..4689785, -
1.87e-86	FFCP PHASE2:Mm9::chr4:154208086..154208123,+	p@chr4:154208086..154208123, +
1.87e-86	FFCP PHASE1:Mm9::chr3:106986057..106986062,+	p1@Kcna10
1.87e-86	FFCP PHASE1:Mm9::chr13:58283583..58283607,-	p@chr13:58283583..58283607, -
1.87e-86	FFCP PHASE2:Mm9::chr3:154459246..154459253,+	p@chr3:154459246..154459253, +
1.87e-86	FFCP PHASE2:Mm9::chr9:42208023..42208043,-	p4@Tecta
1.87e-86	FFCP PHASE1:Mm9::chr6:86746562..86746579,-	p@chr6:86746562..86746579, -
1.87e-86	FFCP PHASE2:Mm9::chr1:63733478..63733491,-	p1@Dytn
1.87e-86	FFCP PHASE1:Mm9::chrX:154140781..154140788,+	p@chrX:154140781..154140788, +
1.87e-86	FFCP PHASE1:Mm9::chr3:69811606..69811616,+	p2@Otol1
1.87e-86	FFCP PHASE1:Mm9::chr2:29935952..29935993,+	p7@Pkn3
1.87e-86	FFCP PHASE2:Mm9::chr18:38104702..38104718,-	p@chr18:38104702..38104718, -
1.87e-86	FFCP PHASE2:Mm9::chr6:86745686..86745727,-	p@chr6:86745686..86745727, -
1.87e-86	FFCP PHASE2:Mm9::chr9:42207697..42207705,-	p@chr9:42207697..42207705, -
1.87e-86	FFCP PHASE1:Mm9::chr2:121206695..121206711,-	p1@Strc
1.87e-86	FFCP PHASE1:Mm9::chr11:120222470..120222516,+	p2@Fscn2
1.87e-86	FFCP PHASE2:Mm9::chrX:154140800..154140810,+	p@chrX:154140800..154140810, +
1.87e-86	FFCP PHASE1:Mm9::chr1:172843885..172843890,-	p@chr1:172843885..172843890, -
1.87e-86	FFCP PHASE1:Mm9::chr12:13508015..13508019,+	p@chr12:13508015..13508019, +
1.87e-86	FFCP PHASE2:Mm9::chr18:59222033..59222043,+	p7@A730017C20Rik
1.87e-86	FFCP PHASE2:Mm9::chr1:43454162..43454170,-	p@chr1:43454162..43454170, -
1.87e-86	FFCP PHASE2:Mm9::chr10:107349418..107349423,-	p5@Otogl
1.87e-86	FFCP PHASE2:Mm9::chr17:31335869..31335899,-	p1@Tmprss3
1.87e-86	FFCP PHASE2:Mm9::chr14:47293487..47293493,-	p@chr14:47293487..47293493, -
1.87e-86	FFCP PHASE1:Mm9::chr9:42208023..42208043,-	p4@Tecta
1.87e-86	FFCP PHASE1:Mm9::chr3:154693281..154693317,-	p@chr3:154693281..154693317, -
1.87e-86	FFCP PHASE1:Mm9::chr7:109265277..109265288,-	p4@Chrna10
1.87e-86	FFCP PHASE2:Mm9::chr7:88068153..88068160,-	p10@Sec11a
1.87e-86	FFCP PHASE1:Mm9::chr5:3909290..3909299,+	p@chr5:3909290..3909299, +
1.87e-86	FFCP PHASE1:Mm9::chr4:115556939..115556945,+	p4@Kncn
1.87e-86	FFCP PHASE1:Mm9::chr10:67371994..67372010,+	p@chr10:67371994..67372010, +
1.87e-86	FFCP PHASE2:Mm9::chr1:194818647..194818660,-	p@chr1:194818647..194818660, -
1.87e-86	FFCP PHASE2:Mm9::chr5:68423014..68423037,+	p1@Grxcr1
1.87e-86	FFCP PHASE1:Mm9::chr9:42207697..42207705,-	p@chr9:42207697..42207705, -
1.87e-86	FFCP PHASE1:Mm9::chr7:27964761..27964768,+	p@chr7:27964761..27964768, +
1.87e-86	FFCP PHASE2:Mm9::chr9:50968647..50968668,-	p@chr9:50968647..50968668, -
1.87e-86	FFCP PHASE2:Mm9::chr9:92087926..92087938,+	p2@Plscr5
1.87e-86	FFCP PHASE2:Mm9::chr3:58626291..58626298,-	p@chr3:58626291..58626298, -
1.87e-86	FFCP PHASE1:Mm9::chr9:56208792..56208814,-	p@chr9:56208792..56208814, -
1.87e-86	FFCP PHASE1:Mm9::chr15:58480061..58480066,+	p5@Fer1l6
1.87e-86	FFCP PHASE2:Mm9::chr5:3909290..3909299,+	p@chr5:3909290..3909299, +
1.87e-86	FFCP PHASE1:Mm9::chr5:150945209..150945220,+	p@chr5:150945209..150945220, +
1.87e-86	FFCP PHASE1:Mm9::chr9:41495920..41495928,-	p@chr9:41495920..41495928, -
1.87e-86	FFCP PHASE1:Mm9::chr2:53464178..53464186,+	p@chr2:53464178..53464186, +
1.87e-86	FFCP PHASE2:Mm9::chr10:80806047..80806059,-	p4@Gipc3
1.87e-86	FFCP PHASE1:Mm9::chr4:151505798..151505818,-	p21@Espn
1.87e-86	FFCP PHASE1:Mm9::chr15:103146966..103146971,-	p@chr15:103146966..103146971, -
1.87e-86	FFCP PHASE2:Mm9::chr19:10536797..10536802,-	p@chr19:10536797..10536802, -
1.87e-86	FFCP PHASE2:Mm9::chr9:56208792..56208814,-	p@chr9:56208792..56208814, -
1.87e-86	FFCP PHASE2:Mm9::chr9:42207887..42207960,-	p1@Tecta
1.87e-86	FFCP PHASE1:Mm9::chr19:55256373..55256384,+	p@chr19:55256373..55256384, +
1.87e-86	FFCP PHASE1:Mm9::chr13:78322370..78322376,-	p4@uc007rhb.1
1.87e-86	FFCP PHASE2:Mm9::chr1:172843813..172843834,-	p@chr1:172843813..172843834, -
1.87e-86	FFCP PHASE1:Mm9::chr1:182528371..182528385,+	p@chr1:182528371..182528385, +
1.87e-86	FFCP PHASE1:Mm9::chr14:31283085..31283097,-	p@chr14:31283085..31283097, -
1.87e-86	FFCP PHASE2:Mm9::chr4:130461150..130461185,+	p@chr4:130461150..130461185, +
1.87e-86	FFCP PHASE1:Mm9::chr6:113251614..113251623,+	p@chr6:113251614..113251623, +
1.87e-86	FFCP PHASE1:Mm9::chr19:10536767..10536777,-	p@chr19:10536767..10536777, -
1.87e-86	FFCP PHASE1:Mm9::chr17:13983102..13983126,+	p@chr17:13983102..13983126, +
1.87e-86	FFCP PHASE2:Mm9::chr3:100724698..100724706,+	p@chr3:100724698..100724706, +
1.87e-86	FFCP PHASE2:Mm9::chr6:30619378..30619412,-	p11@Tsga14
1.87e-86	FFCP PHASE2:Mm9::chr9:42206745..42206774,-	p@chr9:42206745..42206774, -
1.87e-86	FFCP PHASE2:Mm9::chr19:55255206..55255223,+	p1@Tectb
1.87e-86	FFCP PHASE2:Mm9::chr3:106986057..106986062,+	p1@Kcna10
1.87e-86	FFCP PHASE1:Mm9::chr3:35012397..35012405,+	p@chr3:35012397..35012405, +
1.87e-86	FFCP PHASE1:Mm9::chr15:89215306..89215315,+	p@chr15:89215306..89215315, +
1.87e-86	FFCP PHASE1:Mm9::chr10:107349430..107349440,-	p3@Otogl
1.87e-86	FFCP PHASE2:Mm9::chr11:102123535..102123544,+	p5@BC030867
1.87e-86	FFCP PHASE1:Mm9::chr12:109905468..109905474,+	p@chr12:109905468..109905474, +
1.87e-86	FFCP PHASE1:Mm9::chr16:93971325..93971337,-	p@chr16:93971325..93971337, -
1.87e-86	FFCP PHASE2:Mm9::chr3:35012425..35012439,+	p@chr3:35012425..35012439, +
1.87e-86	FFCP PHASE2:Mm9::chr4:115556989..115556997,+	p1@Kncn
1.87e-86	FFCP PHASE2:Mm9::chr17:13983160..13983167,+	p@chr17:13983160..13983167, +

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