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UBERON:0001876

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Name:amygdala
Namespace:FANTOM
Definition:"Subdivision of basal ganglion of telencephalon which is an almond-shaped gray mass in the dorsomedial part of the temporal lobe[FMA]" [FMA:61841, Wikipedia:Amygdala]
Xrefs:
links:

BM:Tel-Am
BTO:0001042
EFO:0000252
EV:0100189
EV:0100190
FMA:61841
GAID:616
[ Amyg.png Amyg.png]
[ 200px-Amyg.png 200px-Amyg.png]
MA:0000887
MAT:0000289
MESH:A.08.186.211.577.090
MIAA:0000289
ncithesaurus:Amygdala
NIF_GrossAnatomy:birnlex_1241
OpenCyc:Mx4rwJC_2ZwpEbGdrcN5Y29ycA

VHOG:0001277
Synonyms: "amygdaloid area" RELATED []
"amygdaloid body" EXACT []
"amygdaloid complex" EXACT [NIF_GrossAnatomy:birnlex_1241]
"amygdaloid nuclear complex" EXACT []
"amygdaloid nuclear group" RELATED [BTO:0001042]
"amygdaloid nuclear groups" EXACT []
"archistriatum" EXACT []
"corpus amygdaloideum" RELATED [BTO:0001042]
"corpus amygdaloideum" RELATED LATIN [Wikipedia:Amygdala]
"nucleus amygdalae" RELATED [BTO:0001042]
Comments:AO notes: MA and FMA differ on relationship to basal ganglion. The FMA text def suggests a subdivision, but it is classified as a subtype
Alt_id: UBERON:FMA_61841-MA_0000887-MIAA_0000289
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0002420(basal ganglion),UBERON:0016538(cortex of temporal lobe)
part_of:UBERON:0000349(limbic system),UBERON:0001869(cerebral hemisphere),UBERON:0001871(temporal lobe)



Children

is a:FF:10360-105E9 (amygdala, newborn, donor10223)
derives from:FF:0010151 (human amygdala - adult donor sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001876 (amygdala), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data