UBERON:0001876
From FANTOM5_SSTAR
Name: | amygdala | |
---|---|---|
Namespace: | FANTOM | |
Definition: | "Subdivision of basal ganglion of telencephalon which is an almond-shaped gray mass in the dorsomedial part of the temporal lobe[FMA]" [FMA:61841, Wikipedia:Amygdala] | |
Xrefs: |
| |
Synonyms: |
"amygdaloid area" RELATED [] "amygdaloid body" EXACT [] "amygdaloid complex" EXACT [NIF_GrossAnatomy:birnlex_1241] "amygdaloid nuclear complex" EXACT [] "amygdaloid nuclear group" RELATED [BTO:0001042] "amygdaloid nuclear groups" EXACT [] "archistriatum" EXACT [] "corpus amygdaloideum" RELATED [BTO:0001042] "corpus amygdaloideum" RELATED LATIN [Wikipedia:Amygdala] "nucleus amygdalae" RELATED [BTO:0001042] | |
Comments: | AO notes: MA and FMA differ on relationship to basal ganglion. The FMA text def suggests a subdivision, but it is classified as a subtype | |
Alt_id: | UBERON:FMA_61841-MA_0000887-MIAA_0000289 | |
Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0002420(basal ganglion),UBERON:0016538(cortex of temporal lobe) |
---|---|
part_of: | UBERON:0000349(limbic system),UBERON:0001869(cerebral hemisphere),UBERON:0001871(temporal lobe) |
Children
is a: | FF:10360-105E9 (amygdala, newborn, donor10223) |
---|---|
derives from: | FF:0010151 (human amygdala - adult donor sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10151-102I7 (amygdala, adult, donor10252)
- 10167-103B5 (amygdala - adult, donor10196)
- 10360-105E9 (amygdala, newborn, donor10223)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001876 (amygdala), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data