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UBERON:0002113

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Name:kidney
Namespace:FANTOM
Definition:"A paired organ which has the production of urine as its primary function." [Wikipedia:Kidney]
Xrefs:
links:

AAO:0000250
BTO:0000671
EFO:0000929
EV:0100096
FMA:7203
GAID:423
galen:Kidney
MA:0000368
MAT:0000119
MESH:A.05.810.453
MIAA:0000119
ncithesaurus:Kidney
OpenCyc:Mx4rvVjlYpwpEbGdrcN5Y29ycA
SCTID:181414000
TAO:0000529

XAO:0003267
Synonyms: "kidney" EXACT []
Alt_id: UBERON:FMA_7204-MA_0001683
UBERON:FMA_7205-MA_0001655
Subset: major_organ
organ_slim
uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000489(cavitated compound organ),UBERON:0005172(abdomen element),UBERON:0006554(urinary system structure),UBERON:0015212(lateral structure)
develops_from:UBERON:0003918(kidney mesenchyme),UBERON:0005095(kidney rudiment)
part_of:UBERON:0000916(abdomen),UBERON:0011143(upper urinary tract)



Children

is a:UBERON:0000080 (mesonephros),UBERON:0002120 (pronephros)
derives from:FF:0010017 (human kidney - adult sample),FF:0010045 (human kidney - fetal sample),FF:0011341 (mouse kidney- embryo E14 sample),FF:0011350 (mouse kidney- embryo E15 sample),FF:0011363 (mouse kidney- embryo E16 sample),FF:0011371 (mouse kidney- embryo E17 sample),FF:0011396 (mouse kidney- neonate N00 sample),FF:0011419 (mouse kidney- neonate N10 sample),FF:0011432 (mouse kidney- neonate N20 sample),FF:0011482 (mouse kidney- neonate N25 sample),FF:0011483 (mouse kidney- neonate N30 sample),FF:0011512 (mouse kidney- embryo E18 sample),FF:0100067 (kidney cell line sample),FF:0102733 (embryonic kidney cell line sample)
part of:UBERON:0001225 (cortex of kidney),CL:0002518 (kidney epithelial cell),UBERON:0004819 (kidney epithelium),UBERON:0005215 (kidney interstitium),UBERON:0006553 (renal duct),UBERON:0007684 (uriniferous tubule),UBERON:0008987 (renal parenchyma),UBERON:0009201 (nephric duct),UBERON:0010532 (primitive nephron),CL:1000497 (kidney cell),CL:1001318 (renal interstitial pericyte)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002113 (kidney), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.73e-86FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_0d1d1ffbce91036345930ae3eff923d7p4@PAX2
1.73e-86FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_0d1d1ffbce91036345930ae3eff923d7p4@PAX2
2.28e-80FFCP PHASE1:Mm9::chr2:74542680..74542705,+#_aed6e5a8abe9236bbdaeb77440fd1f55p6@Hoxd8
2.28e-80FFCP PHASE2:Mm9::chr2:74542680..74542705,+#_aed6e5a8abe9236bbdaeb77440fd1f55p6@Hoxd8
3.64e-74FFCP PHASE1:Mm9::chr2:74542589..74542602,+#_68095423885ab9def956c4c08e2e3d76p8@Hoxd8
3.64e-74FFCP PHASE2:Mm9::chr2:74542589..74542602,+#_68095423885ab9def956c4c08e2e3d76p8@Hoxd8
5.03e-73FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_a13a87c03c8555d5b650842f124205afp3@PAX2
5.03e-73FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_a13a87c03c8555d5b650842f124205afp3@PAX2
3.13e-70FFCP PHASE1:Hg19::chr2:693380..693398,+#_41875a9cbdf39b005511b9e36f2726f3p@chr2:693380..693398, +
3.13e-70FFCP PHASE2:Hg19::chr2:693380..693398,+#_41875a9cbdf39b005511b9e36f2726f3p@chr2:693380..693398, +
5.44e-68FFCP PHASE2:Mm9::chr19:44824107..44824111,-#_82ee867ab4803a051fd71948caa2c084p@chr19:44824107..44824111, -
5.44e-68FFCP PHASE1:Mm9::chr19:44824107..44824111,-#_82ee867ab4803a051fd71948caa2c084p@chr19:44824107..44824111, -
6.57e-66FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_64c727392ba149f604afddda9c050169p7@HOXA10
6.57e-66FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_64c727392ba149f604afddda9c050169p7@HOXA10
2.27e-64FFCP PHASE1:Hg19::chr10:102505493..102505546,+#_a3f6771b658f67b82e7752edf3df18bfp2@PAX2
2.27e-64FFCP PHASE2:Hg19::chr10:102505493..102505546,+#_a3f6771b658f67b82e7752edf3df18bfp2@PAX2
2.61e-63FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_46acaa2ca4fa45f01030cd00726ef3c8p4@AIF1L
2.61e-63FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_46acaa2ca4fa45f01030cd00726ef3c8p4@AIF1L
9.07e-63FFCP PHASE2:Hg19::chr1:81001398..81001426,+#_fbc863096a7f03eb07223051ad104e14p1@ENST00000418041, p1@ENST00000443104
9.07e-63FFCP PHASE1:Hg19::chr1:81001398..81001426,+#_fbc863096a7f03eb07223051ad104e14p1@ENST00000418041, p1@ENST00000443104
1.43e-62FFCP PHASE1:Mm9::chr10:3291561..3291580,+#_20cc53a067fb0b9f671e3c1d232d1b11p@chr10:3291561..3291580, +
1.43e-62FFCP PHASE2:Mm9::chr10:3291561..3291580,+#_20cc53a067fb0b9f671e3c1d232d1b11p@chr10:3291561..3291580, +
7.58e-62FFCP PHASE2:Mm9::chr19:44821149..44821161,+#_988580a7b7b097788f2299f0944be558p@chr19:44821149..44821161, +
7.58e-62FFCP PHASE2:Mm9::chr19:44899724..44899728,+#_988580a7b7b097788f2299f0944be558p@chr19:44899724..44899728, +
7.58e-62FFCP PHASE1:Mm9::chr19:44821149..44821161,+#_988580a7b7b097788f2299f0944be558p@chr19:44821149..44821161, +
7.58e-62FFCP PHASE1:Mm9::chr19:44899724..44899728,+#_988580a7b7b097788f2299f0944be558p@chr19:44899724..44899728, +
4.78e-61FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_aa2fb09f941bde61ae5c288fe085662bp4@MEGF11
4.78e-61FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_aa2fb09f941bde61ae5c288fe085662bp4@MEGF11
1.07e-59FFCP PHASE1:Mm9::chr8:107148422..107148433,+#_c58171c0f40cb8bbdfcfe7c8e7d4eb11p@chr8:107148422..107148433, +
1.07e-59FFCP PHASE2:Mm9::chr8:107148422..107148433,+#_c58171c0f40cb8bbdfcfe7c8e7d4eb11p@chr8:107148422..107148433, +
6.23e-58FFCP PHASE1:Mm9::chr10:50689167..50689171,+#_54e05fde1265853a156f1d35d8a2dc0cp@chr10:50689167..50689171, +
6.23e-58FFCP PHASE2:Mm9::chr10:50689167..50689171,+#_54e05fde1265853a156f1d35d8a2dc0cp@chr10:50689167..50689171, +
8.0e-58FFCP PHASE2:Mm9::chr5:24755801..24755819,+#_b545b2203bfc3b62e18cb0d98d2fc64bp@chr5:24755801..24755819, +
8.0e-58FFCP PHASE1:Mm9::chr5:24755801..24755819,+#_b545b2203bfc3b62e18cb0d98d2fc64bp@chr5:24755801..24755819, +
1.03e-57FFCP PHASE1:Mm9::chr19:59532611..59532623,+#_8405bf0fb123577b459e38914aa67a90p@chr19:59532611..59532623, +
1.03e-57FFCP PHASE2:Mm9::chr19:59532611..59532623,+#_8405bf0fb123577b459e38914aa67a90p@chr19:59532611..59532623, +
2.2e-56FFCP PHASE1:Mm9::chr4:44956599..44956663,+#_ad82d226d875eb4e1e555d5388780761p1@ENSMUST00000154177
2.2e-56FFCP PHASE2:Mm9::chr4:44956599..44956663,+#_ad82d226d875eb4e1e555d5388780761p1@ENSMUST00000154177
9.89e-56FFCP PHASE1:Mm9::chr10:39251651..39251690,+#_a424da522af4a2324101bf0c5c1afc64p@chr10:39251651..39251690, +
9.89e-56FFCP PHASE2:Mm9::chr1:89952042..89952053,+#_a424da522af4a2324101bf0c5c1afc64p2@LOC100048662, p2@LOC100048744, p2@Ugt1a10
9.89e-56FFCP PHASE2:Mm9::chr5:5694436..5694447,-#_a424da522af4a2324101bf0c5c1afc64p7@Steap2
9.89e-56FFCP PHASE1:Mm9::chr10:51915118..51915138,-#_a424da522af4a2324101bf0c5c1afc64p4@Ros1
9.89e-56FFCP PHASE1:Mm9::chr1:89952042..89952053,+#_a424da522af4a2324101bf0c5c1afc64p2@LOC100048662, p2@LOC100048744, p2@Ugt1a10
9.89e-56FFCP PHASE1:Mm9::chr10:79277411..79277429,+#_a424da522af4a2324101bf0c5c1afc64p@chr10:79277411..79277429, +
9.89e-56FFCP PHASE2:Mm9::chr10:79277411..79277429,+#_a424da522af4a2324101bf0c5c1afc64p@chr10:79277411..79277429, +
9.89e-56FFCP PHASE1:Mm9::chr19:17554168..17554181,+#_a424da522af4a2324101bf0c5c1afc64p@chr19:17554168..17554181, +
9.89e-56FFCP PHASE1:Mm9::chr5:5694436..5694447,-#_a424da522af4a2324101bf0c5c1afc64p7@Steap2
9.89e-56FFCP PHASE2:Mm9::chr19:17554168..17554181,+#_a424da522af4a2324101bf0c5c1afc64p@chr19:17554168..17554181, +
9.89e-56FFCP PHASE1:Mm9::chr2:74971765..74971779,-#_a424da522af4a2324101bf0c5c1afc64p@chr2:74971765..74971779, -
9.89e-56FFCP PHASE1:Mm9::chr7:31244771..31244782,+#_a424da522af4a2324101bf0c5c1afc64p2@Nphs1
9.89e-56FFCP PHASE2:Mm9::chr7:31244771..31244782,+#_a424da522af4a2324101bf0c5c1afc64p2@Nphs1
9.89e-56FFCP PHASE1:Mm9::chr10:50622895..50622905,+#_a424da522af4a2324101bf0c5c1afc64p@chr10:50622895..50622905, +
9.89e-56FFCP PHASE2:Mm9::chr7:47891824..47891827,-#_a424da522af4a2324101bf0c5c1afc64p@chr7:47891824..47891827, -
9.89e-56FFCP PHASE1:Mm9::chr7:126785928..126785945,-#_a424da522af4a2324101bf0c5c1afc64p3@uc009jll.1
9.89e-56FFCP PHASE2:Mm9::chr10:50622895..50622905,+#_a424da522af4a2324101bf0c5c1afc64p@chr10:50622895..50622905, +
9.89e-56FFCP PHASE2:Mm9::chr10:39251651..39251690,+#_a424da522af4a2324101bf0c5c1afc64p@chr10:39251651..39251690, +
9.89e-56FFCP PHASE1:Mm9::chr7:47891824..47891827,-#_a424da522af4a2324101bf0c5c1afc64p@chr7:47891824..47891827, -
9.89e-56FFCP PHASE2:Mm9::chr7:126785928..126785945,-#_a424da522af4a2324101bf0c5c1afc64p3@uc009jll.1
9.89e-56FFCP PHASE2:Mm9::chr8:118959620..118959632,-#_a424da522af4a2324101bf0c5c1afc64p@chr8:118959620..118959632, -
9.89e-56FFCP PHASE2:Mm9::chr10:51915118..51915138,-#_a424da522af4a2324101bf0c5c1afc64p4@Ros1
9.89e-56FFCP PHASE2:Mm9::chr2:74971765..74971779,-#_a424da522af4a2324101bf0c5c1afc64p@chr2:74971765..74971779, -
9.89e-56FFCP PHASE1:Mm9::chr8:118959620..118959632,-#_a424da522af4a2324101bf0c5c1afc64p@chr8:118959620..118959632, -
1.76e-55FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_981abce6b09acd91e99658ddc43bbe06p@chr18:3456189..3456200, +
1.76e-55FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_981abce6b09acd91e99658ddc43bbe06p@chr18:3456189..3456200, +
3.07e-55FFCP PHASE1:Hg19::chr9:119741711..119741743,-#_a400374eb2889efd6445ca52d90586eap@chr9:119741711..119741743, -
3.07e-55FFCP PHASE2:Hg19::chr9:119741711..119741743,-#_a400374eb2889efd6445ca52d90586eap@chr9:119741711..119741743, -
6.17e-52FFCP PHASE1:Mm9::chr11:75720190..75720216,-#_f7c11af8bf9c89d6d7f19863fef6dac7p@chr11:75720190..75720216, -
6.17e-52FFCP PHASE2:Mm9::chr11:75720190..75720216,-#_f7c11af8bf9c89d6d7f19863fef6dac7p@chr11:75720190..75720216, -
6.97e-52FFCP PHASE1:Mm9::chr13:108834249..108834299,+#_a03c2022dbdb4b25b34f66669d72650fp3@2810008M24Rik
6.97e-52FFCP PHASE2:Mm9::chr13:108834249..108834299,+#_a03c2022dbdb4b25b34f66669d72650fp3@2810008M24Rik
1.64e-51FFCP PHASE2:Mm9::chr2:74975548..74975563,-#_56b82a729ee356a29e8ea9c1eb5bc2cbp1@ENSMUST00000143898
1.64e-51FFCP PHASE1:Mm9::chr2:74975548..74975563,-#_56b82a729ee356a29e8ea9c1eb5bc2cbp1@ENSMUST00000143898
6.24e-51FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_63d3eca42b0ad1c52350e7febb1429f7p@chr7:7606139..7606151, -
6.24e-51FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_63d3eca42b0ad1c52350e7febb1429f7p@chr7:7606139..7606151, -
1.67e-50FFCP PHASE1:Mm9::chr3:96637141..96637180,+#_31614da16c91ad181d476b7abc155c64p4@Pdzk1
1.67e-50FFCP PHASE2:Mm9::chr3:96637141..96637180,+#_31614da16c91ad181d476b7abc155c64p4@Pdzk1
2.31e-50FFCP PHASE1:Mm9::chr13:98786159..98786170,-#_7a071ea0a08e743b985b4b4ef35cdd23p8@Rgnef
2.31e-50FFCP PHASE2:Mm9::chr13:98786159..98786170,-#_7a071ea0a08e743b985b4b4ef35cdd23p8@Rgnef
2.36e-50FFCP PHASE2:Mm9::chr16:88563303..88563315,-#_32d4cc41dfa538e34da0bd9050277630p5@Cldn8
2.36e-50FFCP PHASE1:Mm9::chr16:88563303..88563315,-#_32d4cc41dfa538e34da0bd9050277630p5@Cldn8
2.38e-50FFCP PHASE1:Mm9::chr3:154257229..154257241,-#_1ed8bc8721e1e6431e04dea521612533p@chr3:154257229..154257241, -
2.38e-50FFCP PHASE2:Mm9::chr7:126785968..126785980,-#_1ed8bc8721e1e6431e04dea521612533p2@uc009jll.1
2.38e-50FFCP PHASE2:Mm9::chr3:154257229..154257241,-#_1ed8bc8721e1e6431e04dea521612533p@chr3:154257229..154257241, -
2.38e-50FFCP PHASE1:Mm9::chr10:12353875..12353921,-#_1ed8bc8721e1e6431e04dea521612533p@chr10:12353875..12353921, -
2.38e-50FFCP PHASE1:Mm9::chr7:31244710..31244719,+#_1ed8bc8721e1e6431e04dea521612533p4@Nphs1
2.38e-50FFCP PHASE2:Mm9::chr10:12353875..12353921,-#_1ed8bc8721e1e6431e04dea521612533p@chr10:12353875..12353921, -
2.38e-50FFCP PHASE1:Mm9::chr7:126785968..126785980,-#_1ed8bc8721e1e6431e04dea521612533p2@uc009jll.1
2.38e-50FFCP PHASE2:Mm9::chr7:31244710..31244719,+#_1ed8bc8721e1e6431e04dea521612533p4@Nphs1
3.53e-50FFCP PHASE2:Mm9::chr10:3291584..3291599,+#_b2d4bd6a4046829b291a735b9315ecfap@chr10:3291584..3291599, +
3.53e-50FFCP PHASE1:Mm9::chr10:3291584..3291599,+#_b2d4bd6a4046829b291a735b9315ecfap@chr10:3291584..3291599, +
5.98e-50FFCP PHASE2:Mm9::chr17:34764056..34764069,-#_adb5a7c66706e6a4b8ff00f26d7765d3p9@Ppt2
5.98e-50FFCP PHASE1:Mm9::chr17:34764056..34764069,-#_adb5a7c66706e6a4b8ff00f26d7765d3p9@Ppt2
6.48e-50FFCP PHASE1:Mm9::chr4:107817557..107817589,-#_2441805e5e8b4bfa2c386b1ac16b7099p5@Scp2
6.48e-50FFCP PHASE2:Mm9::chr4:107817557..107817589,-#_2441805e5e8b4bfa2c386b1ac16b7099p5@Scp2
7.43e-50FFCP PHASE1:Mm9::chr2:74543235..74543246,+#_d174822e9e106c0e80825ede2ea5236ep7@Hoxd8
7.43e-50FFCP PHASE2:Mm9::chr2:74543235..74543246,+#_d174822e9e106c0e80825ede2ea5236ep7@Hoxd8
1.21e-49FFCP PHASE1:Mm9::chr16:26463232..26463247,+#_2fc2bec7690c7ce7863ec16ead7ef5d0p3@Cldn16
1.21e-49FFCP PHASE1:Mm9::chr6:83708841..83708859,+#_2fc2bec7690c7ce7863ec16ead7ef5d0p@chr6:83708841..83708859, +
1.21e-49FFCP PHASE1:Mm9::chr6:129464470..129464474,+#_2fc2bec7690c7ce7863ec16ead7ef5d0p@chr6:129464470..129464474, +
1.21e-49FFCP PHASE1:Mm9::chr2:124984656..124984673,+#_2fc2bec7690c7ce7863ec16ead7ef5d0p@chr2:124984656..124984673, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "One of either of a pair of structures lying on either side of the dorsal aorta in which fluid balance is regulated and waste is excreted out in the form of urine.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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