UBERON:0002428
From FANTOM5_SSTAR
| Name: | limb bone | |
|---|---|---|
| Namespace: | FANTOM | |
| Definition: | "A bone that is part of a limb [Obol]." [OBOL:automatic] | |
| Xrefs: |
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| Synonyms: |
"bone of limb" EXACT [OBOL:automatic] "free limb bone" EXACT [UBERON:cjm, UBERONREF:0000003] | |
| Comments: | AO notes: NCITA includes clavicle. MA:'limb bone' is actually a bone of limb or girdle // Note that the formal definition is very inclusive, and includes sesamoids | |
| Alt_id: | UBERON:MA_0000688-MIAA_0000151 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002513(endochondral bone),UBERON:0004375(bone of free limb or fin),UBERON:0015061(limb endochondral element) |
|---|---|
| develops_from: | UBERON:0010881(limb cartilage element) |
| part_of: | UBERON:0002101(limb),UBERON:0004381(skeleton of limb) |
Children
| is a: | UBERON:0003464 (hindlimb bone),UBERON:0003606 (limb long bone) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Mouse (Mus musculus)
- 1350-25C3 (bone (os femoris), neonate N20)
- 1525-43A6 (bone (os femoris), neonate N16)
- 1985-43F5 (bone (os femoris), neonate N02)
- 56-12G2 (bone (os femoris), adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002428 (limb bone), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
