UBERON:0002529
From FANTOM5_SSTAR
| Name: | limb segment | |
|---|---|---|
| Namespace: | FANTOM | |
| Definition: | "A major subdivision of a mature or developing limb, including both skeletal elements (or the mesenchyme that gives rise to the skeletal elements) and associated tissues, such as muscle, connective tissue, integument. Examples: autopod region, zeugopod region, stylopod region, metapodial region, arm region. Excludes the limb girdles." [UBERON:cjm] | |
| Xrefs: |
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| Synonyms: |
"free limb segment" EXACT [FMA:241863] "limb region" EXACT [] "region of limb" EXACT [] "segment of limb" EXACT [] "subdivision of limb" EXACT [] | |
| Comments: | note FMA has both limb segment and free limb segment, the former includes the girdles. Note that MA uses the term more generally and includes A,S,Z,S+Z(arm/leg), whereas FMA is just A,S,Z | |
| Alt_id: | UBERON:MA_0002889-FMA_9661 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0010538(paired limb/fin segment) |
|---|---|
| disjoint_from: | UBERON:0010912(subdivision of skeleton) |
| part_of: | UBERON:0002101(limb) |
Children
| is a: | UBERON:0002470 (autopod region),UBERON:0002471 (zeugopod),UBERON:0002472 (stylopod),UBERON:0008784 (lower limb segment),UBERON:0008785 (upper limb segment),UBERON:0008837 (palmar/plantar part of autopod),UBERON:0009551 (distal segment of digit),UBERON:0012139 (segment of autopod) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10264-104D3
- 10267-104D6
- 10273-104E3
- 10282-104F3 (skeletal muscle - soleus muscle, donor1)
- 10285-104F6
- 10286-104F7 (Skin - palm, donor1)
- 10292-104G4 (achilles tendon, donor2)
- 10295-104G7 (cruciate ligament, donor2)
- 10301-104H4 (Fingernail (including nail plate, eponychium and hyponychium), donor2)
- 10310-104I4
... further results Mouse (Mus musculus)
- 10264-104D3
- 10267-104D6
- 10273-104E3
- 10282-104F3 (skeletal muscle - soleus muscle, donor1)
- 10285-104F6
- 10286-104F7 (Skin - palm, donor1)
- 10292-104G4 (achilles tendon, donor2)
- 10295-104G7 (cruciate ligament, donor2)
- 10301-104H4 (Fingernail (including nail plate, eponychium and hyponychium), donor2)
- 10310-104I4
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002529 (limb segment), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
