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UBERON:0002950

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Name:regional part of midbrain
Namespace:FANTOM
Definition:"A regional part of brain that is part of a midbrain [Obol]." [OBOL:automatic]
Xrefs:
links:

FMA:61997

NIF_GrossAnatomy:birnlex_763
Synonyms: "anatomical structure of brain of midbrain" EXACT [OBOL:automatic]
"biological structure of brain of midbrain" EXACT [OBOL:automatic]
"brain anatomical structure of midbrain" EXACT [OBOL:automatic]
"brain biological structure of midbrain" EXACT [OBOL:automatic]
"midbrain anatomical structure of brain" EXACT [OBOL:automatic]
"midbrain biological structure of brain" EXACT [OBOL:automatic]
"midbrain brain anatomical structure" EXACT [OBOL:automatic]
"midbrain brain biological structure" EXACT [OBOL:automatic]
"midbrain neuraxis segment" EXACT [OBOL:automatic]
"midbrain regional part of brain" EXACT [OBOL:automatic]
"midbrain segment" EXACT [FMA:61997]
"midbrain segment of brain" EXACT [OBOL:automatic]
"neuraxis segment of midbrain" EXACT [OBOL:automatic]
"regional part of brain of midbrain" EXACT [OBOL:automatic]
"segment of brain of midbrain" EXACT [OBOL:automatic]
"segment of midbrain" EXACT [NIF_GrossAnatomy:birnlex_763]
Alt_id: UBERON:NIF_GrossAnatomy_birnlex_763-FMA_61997

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0002616(regional part of brain)
part_of:UBERON:0001891(midbrain)



Children

is a:UBERON:0002314 (midbrain tectum)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002950 (regional part of midbrain), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data