UBERON:0002950
From FANTOM5_SSTAR
Name: | regional part of midbrain | |
---|---|---|
Namespace: | FANTOM | |
Definition: | "A regional part of brain that is part of a midbrain [Obol]." [OBOL:automatic] | |
Xrefs: |
| |
Synonyms: |
"anatomical structure of brain of midbrain" EXACT [OBOL:automatic] "biological structure of brain of midbrain" EXACT [OBOL:automatic] "brain anatomical structure of midbrain" EXACT [OBOL:automatic] "brain biological structure of midbrain" EXACT [OBOL:automatic] "midbrain anatomical structure of brain" EXACT [OBOL:automatic] "midbrain biological structure of brain" EXACT [OBOL:automatic] "midbrain brain anatomical structure" EXACT [OBOL:automatic] "midbrain brain biological structure" EXACT [OBOL:automatic] "midbrain neuraxis segment" EXACT [OBOL:automatic] "midbrain regional part of brain" EXACT [OBOL:automatic] "midbrain segment" EXACT [FMA:61997] "midbrain segment of brain" EXACT [OBOL:automatic] "neuraxis segment of midbrain" EXACT [OBOL:automatic] "regional part of brain of midbrain" EXACT [OBOL:automatic] "segment of brain of midbrain" EXACT [OBOL:automatic] "segment of midbrain" EXACT [NIF_GrossAnatomy:birnlex_763] | |
Alt_id: | UBERON:NIF_GrossAnatomy_birnlex_763-FMA_61997 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0002616(regional part of brain) |
---|---|
part_of: | UBERON:0001891(midbrain) |
Children
is a: | UBERON:0002314 (midbrain tectum) |
---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10158-103A5 (substantia nigra, adult, donor10252)
- 10178-103C7 (substantia nigra - adult, donor10196)
- 10358-105E7 (substantia nigra, newborn, donor10223)
- 10371-105G2 (substantia nigra, adult, donor10258)
- 11489-119E4 (Mouse Neurons - substantia nigra, donor4)
- 11490-119E5 (Mouse Neurons - substantia nigra, donor5)
- 11770-123I6 (Mouse Neurons - substantia nigra, donor6)
- 16-22A4 (corpora quadrigemina, adult)
Mouse (Mus musculus)
- 10158-103A5 (substantia nigra, adult, donor10252)
- 10178-103C7 (substantia nigra - adult, donor10196)
- 10358-105E7 (substantia nigra, newborn, donor10223)
- 10371-105G2 (substantia nigra, adult, donor10258)
- 11489-119E4 (Mouse Neurons - substantia nigra, donor4)
- 11490-119E5 (Mouse Neurons - substantia nigra, donor5)
- 11770-123I6 (Mouse Neurons - substantia nigra, donor6)
- 16-22A4 (corpora quadrigemina, adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002950 (regional part of midbrain), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data