UBERON:0003528
From FANTOM5_SSTAR
| Name: | brain grey matter | |
|---|---|---|
| Namespace: | FANTOM | |
| Definition: | "A gray matter of neuraxis that is part of a brain [Obol]." [OBOL:automatic] | |
| Xrefs: |
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| Synonyms: |
"brain gray matter" EXACT [OBOL:automatic] "brain gray matter of neuraxis" EXACT [OBOL:automatic] "brain grey substance" EXACT [OBOL:automatic] "gray matter of brain" EXACT [OBOL:automatic] "gray matter of neuraxis of brain" EXACT [OBOL:automatic] "grey matter of brain" EXACT [OBOL:automatic] "grey substance of brain" EXACT [OBOL:automatic] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002020(gray matter) |
|---|---|
| part_of: | UBERON:0000955(brain) |
Children
| is a: | UBERON:0002420 (basal ganglion),UBERON:0006514 (pallidum),UBERON:0010122 (future caudate nucleus),UBERON:0011300 (gray matter of telencephalon) |
|---|---|
| part of: | UBERON:0002308 (nucleus of brain) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10031-101E4 (temporal lobe, adult, pool1)
- 10032-101E5 (postcentral gyrus, adult, pool1)
- 10034-101E7 (parietal lobe, adult, pool1)
- 10036-101E9 (occipital pole, adult, pool1)
- 10037-101F1 (nucleus accumbens, adult, pool1)
- 10039-101F3 (insula, adult, pool1)
- 10040-101F4 (frontal lobe, adult, pool1)
- 10071-101I8 (duodenum, fetal, donor1)
- 10072-101I9 (parietal lobe, fetal, donor1)
- 10073-102A1 (occipital lobe, fetal, donor1)
... further results Mouse (Mus musculus)
- 10031-101E4 (temporal lobe, adult, pool1)
- 10032-101E5 (postcentral gyrus, adult, pool1)
- 10034-101E7 (parietal lobe, adult, pool1)
- 10036-101E9 (occipital pole, adult, pool1)
- 10037-101F1 (nucleus accumbens, adult, pool1)
- 10039-101F3 (insula, adult, pool1)
- 10040-101F4 (frontal lobe, adult, pool1)
- 10071-101I8 (duodenum, fetal, donor1)
- 10072-101I9 (parietal lobe, fetal, donor1)
- 10073-102A1 (occipital lobe, fetal, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003528 (brain grey matter), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
