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UBERON:0004178

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Name:aorta smooth muscle tissue
Namespace:FANTOM
Definition:"A portion of smooth muscle tissue that is part of an aorta [Obol]." [OBOL:automatic]
Xrefs:
links:

BTO:0001685
EFO:0002775
MA:0000702

ncithesaurus:Aorta_Smooth_Muscle_Tissue
Synonyms: "adult aorta involuntary muscle" EXACT [OBOL:automatic]
"adult aorta non-striated muscle" EXACT [OBOL:automatic]
"adult aorta smooth muscle" EXACT [OBOL:automatic]
"adult aorta smooth muscle tissue" EXACT [OBOL:automatic]
"aorta involuntary muscle" EXACT [OBOL:automatic]
"aorta non-striated muscle" EXACT [OBOL:automatic]
"aorta smooth muscle" EXACT [OBOL:automatic]
"aortic smooth muscle" EXACT [BTO:0001685]
"dorsal aorta involuntary muscle" EXACT [OBOL:automatic]
"dorsal aorta non-striated muscle" EXACT [OBOL:automatic]
"dorsal aorta smooth muscle" EXACT [OBOL:automatic]
"dorsal aorta smooth muscle tissue" EXACT [OBOL:automatic]
"involuntary muscle of adult aorta" EXACT [OBOL:automatic]
"involuntary muscle of aorta" EXACT [OBOL:automatic]
"involuntary muscle of dorsal aorta" EXACT [OBOL:automatic]
"involuntary muscle of trunk of aortic tree" EXACT [OBOL:automatic]
"non-striated muscle of adult aorta" EXACT [OBOL:automatic]
"non-striated muscle of aorta" EXACT [OBOL:automatic]
"non-striated muscle of dorsal aorta" EXACT [OBOL:automatic]
"non-striated muscle of trunk of aortic tree" EXACT [OBOL:automatic]
"smooth muscle of adult aorta" EXACT [OBOL:automatic]
"smooth muscle of aorta" EXACT [OBOL:automatic]
"smooth muscle of dorsal aorta" EXACT [OBOL:automatic]
"smooth muscle of trunk of aortic tree" EXACT [OBOL:automatic]
"smooth muscle tissue of adult aorta" EXACT [OBOL:automatic]
"smooth muscle tissue of aorta" EXACT [OBOL:automatic]
"smooth muscle tissue of dorsal aorta" EXACT [OBOL:automatic]
"smooth muscle tissue of trunk of aortic tree" EXACT [OBOL:automatic]
"trunk of aortic tree involuntary muscle" EXACT [OBOL:automatic]
"trunk of aortic tree non-striated muscle" EXACT [OBOL:automatic]
"trunk of aortic tree smooth muscle" EXACT [OBOL:automatic]
"trunk of aortic tree smooth muscle tissue" EXACT [OBOL:automatic]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0004237(blood vessel smooth muscle),UBERON:0004695(arterial system smooth muscle)
part_of:UBERON:0000947(aorta)



Children

part of:CL:0002539 (aortic smooth muscle cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004178 (aorta smooth muscle tissue), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data