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UBERON:0004637

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Name:otic capsule
Definition:"The capsule surrounding the inner ear mechanism; in elasmobranchs, it remains cartilaginous in the adult; in the embryos of higher vertebrates, it is cartilaginous at first but later becomes bony (at approximately 23 weeks in humans)[Biology-Online]. Bilaterally paired cartilage encasing the semicircular canals of the inner ear[ZFA]." http://www.biology-online.org/dictionary/Otic_capsule, ZFA:0001500
Xrefs:
links:

AAO:0010143
SCTID:361515007

VHOG:0000854
Synonyms: "auditory capsule" RELATED [VHOG:0000854]
"otic capsule" EXACT [ZFA:0001500]
"periotic" RELATED []
"periotic capsule" RELATED [VHOG:0000854]
Comments:Taxon notes: developmental relationships need to be checked

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000020(sense organ),UBERON:0004120(mesoderm-derived structure),UBERON:0004121(ectoderm-derived structure),UBERON:0004765(skeletal element),UBERON:0010314(structure with developmental contribution from neural crest)
develops_from:UBERON:0010351(otic capsule cartilage condensation)
part_of:UBERON:0001694(petrous part of temporal bone),UBERON:0001703(neurocranium),UBERON:0001846(internal ear)



Children

part of:UBERON:0010113 (future membranous labyrinth)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004637 (otic capsule), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr9:50968647..50968668,-#_ef0848008da7a18a37873e78b0320066p@chr9:50968647..50968668, -
1.87e-86FFCP PHASE1:Mm9::chr10:67371994..67372010,+#_ef0848008da7a18a37873e78b0320066p@chr10:67371994..67372010, +
1.87e-86FFCP PHASE2:Mm9::chr6:113251606..113251613,+#_ef0848008da7a18a37873e78b0320066p@chr6:113251606..113251613, +
1.87e-86FFCP PHASE2:Mm9::chr2:170417150..170417155,-#_ef0848008da7a18a37873e78b0320066p@chr2:170417150..170417155, -
1.87e-86FFCP PHASE2:Mm9::chr18:66033526..66033539,-#_ef0848008da7a18a37873e78b0320066p@chr18:66033526..66033539, -
1.87e-86FFCP PHASE2:Mm9::chr14:31283085..31283097,-#_ef0848008da7a18a37873e78b0320066p@chr14:31283085..31283097, -
1.87e-86FFCP PHASE2:Mm9::chr7:29733825..29733837,-#_ef0848008da7a18a37873e78b0320066p@chr7:29733825..29733837, -
1.87e-86FFCP PHASE2:Mm9::chr3:69811590..69811601,+#_ef0848008da7a18a37873e78b0320066p1@Otol1
1.87e-86FFCP PHASE2:Mm9::chr19:22767090..22767099,+#_ef0848008da7a18a37873e78b0320066p18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr18:81314626..81314636,+#_ef0848008da7a18a37873e78b0320066p@chr18:81314626..81314636, +
1.87e-86FFCP PHASE2:Mm9::chr2:75320183..75320189,+#_ef0848008da7a18a37873e78b0320066p@chr2:75320183..75320189, +
1.87e-86FFCP PHASE2:Mm9::chr12:13508015..13508019,+#_ef0848008da7a18a37873e78b0320066p@chr12:13508015..13508019, +
1.87e-86FFCP PHASE1:Mm9::chr8:13414266..13414279,+#_ef0848008da7a18a37873e78b0320066p@chr8:13414266..13414279, +
1.87e-86FFCP PHASE2:Mm9::chr3:154459231..154459240,+#_ef0848008da7a18a37873e78b0320066p@chr3:154459231..154459240, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011956..67011967,+#_ef0848008da7a18a37873e78b0320066p1@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207998..42208009,-#_ef0848008da7a18a37873e78b0320066p6@Tecta
1.87e-86FFCP PHASE1:Mm9::chr15:58480061..58480066,+#_ef0848008da7a18a37873e78b0320066p5@Fer1l6
1.87e-86FFCP PHASE1:Mm9::chr18:81327205..81327211,+#_ef0848008da7a18a37873e78b0320066p@chr18:81327205..81327211, +
1.87e-86FFCP PHASE2:Mm9::chr16:96494788..96494801,+#_ef0848008da7a18a37873e78b0320066p12@B3galt5
1.87e-86FFCP PHASE1:Mm9::chr14:31283085..31283097,-#_ef0848008da7a18a37873e78b0320066p@chr14:31283085..31283097, -
1.87e-86FFCP PHASE1:Mm9::chr3:31585340..31585360,+#_ef0848008da7a18a37873e78b0320066p@chr3:31585340..31585360, +
1.87e-86FFCP PHASE2:Mm9::chr13:43699228..43699239,+#_ef0848008da7a18a37873e78b0320066p@chr13:43699228..43699239, +
1.87e-86FFCP PHASE2:Mm9::chr15:58022966..58022995,-#_ef0848008da7a18a37873e78b0320066p@chr15:58022966..58022995, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207397..42207408,-#_ef0848008da7a18a37873e78b0320066p@chr9:42207397..42207408, -
1.87e-86FFCP PHASE1:Mm9::chr8:94180607..94180619,-#_ef0848008da7a18a37873e78b0320066p@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr2:170417150..170417155,-#_ef0848008da7a18a37873e78b0320066p@chr2:170417150..170417155, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983102..13983126,+#_ef0848008da7a18a37873e78b0320066p@chr17:13983102..13983126, +
1.87e-86FFCP PHASE1:Mm9::chr15:103146966..103146971,-#_ef0848008da7a18a37873e78b0320066p@chr15:103146966..103146971, -
1.87e-86FFCP PHASE1:Mm9::chr4:115556989..115556997,+#_ef0848008da7a18a37873e78b0320066p1@Kncn
1.87e-86FFCP PHASE1:Mm9::chr18:59222033..59222043,+#_ef0848008da7a18a37873e78b0320066p7@A730017C20Rik
1.87e-86FFCP PHASE2:Mm9::chrX:154140781..154140788,+#_ef0848008da7a18a37873e78b0320066p@chrX:154140781..154140788, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207792..42207805,-#_ef0848008da7a18a37873e78b0320066p11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr13:78322370..78322376,-#_ef0848008da7a18a37873e78b0320066p4@uc007rhb.1
1.87e-86FFCP PHASE1:Mm9::chr2:73232344..73232356,-#_ef0848008da7a18a37873e78b0320066p@chr2:73232344..73232356, -
1.87e-86FFCP PHASE1:Mm9::chr1:93218682..93218691,+#_ef0848008da7a18a37873e78b0320066p2@Espnl
1.87e-86FFCP PHASE1:Mm9::chr7:88068153..88068160,-#_ef0848008da7a18a37873e78b0320066p10@Sec11a
1.87e-86FFCP PHASE1:Mm9::chr12:109905468..109905474,+#_ef0848008da7a18a37873e78b0320066p@chr12:109905468..109905474, +
1.87e-86FFCP PHASE2:Mm9::chr9:41495920..41495928,-#_ef0848008da7a18a37873e78b0320066p@chr9:41495920..41495928, -
1.87e-86FFCP PHASE1:Mm9::chr2:14685072..14685084,+#_ef0848008da7a18a37873e78b0320066p41@Cacnb2
1.87e-86FFCP PHASE1:Mm9::chr16:93971325..93971337,-#_ef0848008da7a18a37873e78b0320066p@chr16:93971325..93971337, -
1.87e-86FFCP PHASE2:Mm9::chr4:133802857..133802884,+#_ef0848008da7a18a37873e78b0320066p@chr4:133802857..133802884, +
1.87e-86FFCP PHASE1:Mm9::chr5:21371424..21371435,-#_ef0848008da7a18a37873e78b0320066p2@Slc26a5
1.87e-86FFCP PHASE2:Mm9::chr13:78322383..78322395,-#_ef0848008da7a18a37873e78b0320066p2@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528388..182528403,+#_ef0848008da7a18a37873e78b0320066p@chr1:182528388..182528403, +
1.87e-86FFCP PHASE2:Mm9::chr2:121206677..121206683,-#_ef0848008da7a18a37873e78b0320066p3@Strc
1.87e-86FFCP PHASE1:Mm9::chr6:30619378..30619412,-#_ef0848008da7a18a37873e78b0320066p11@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr15:89215306..89215315,+#_ef0848008da7a18a37873e78b0320066p@chr15:89215306..89215315, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349430..107349440,-#_ef0848008da7a18a37873e78b0320066p3@Otogl
1.87e-86FFCP PHASE2:Mm9::chr8:13425469..13425503,+#_ef0848008da7a18a37873e78b0320066p@chr8:13425469..13425503, +
1.87e-86FFCP PHASE2:Mm9::chr10:80806020..80806031,-#_ef0848008da7a18a37873e78b0320066p3@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr10:67371994..67372010,+#_ef0848008da7a18a37873e78b0320066p@chr10:67371994..67372010, +
1.87e-86FFCP PHASE1:Mm9::chr5:144115382..144115389,+#_ef0848008da7a18a37873e78b0320066p@chr5:144115382..144115389, +
1.87e-86FFCP PHASE1:Mm9::chr14:63099970..63099980,-#_ef0848008da7a18a37873e78b0320066p@chr14:63099970..63099980, -
1.87e-86FFCP PHASE2:Mm9::chr15:65641779..65641790,+#_ef0848008da7a18a37873e78b0320066p@chr15:65641779..65641790, +
1.87e-86FFCP PHASE1:Mm9::chr7:139597684..139597691,+#_ef0848008da7a18a37873e78b0320066p@chr7:139597684..139597691, +
1.87e-86FFCP PHASE1:Mm9::chr17:31335869..31335899,-#_ef0848008da7a18a37873e78b0320066p1@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr19:21028739..21028785,-#_ef0848008da7a18a37873e78b0320066p1@Tmc1
1.87e-86FFCP PHASE1:Mm9::chr11:8405038..8405048,-#_ef0848008da7a18a37873e78b0320066p@chr11:8405038..8405048, -
1.87e-86FFCP PHASE2:Mm9::chr14:20649897..20649907,+#_ef0848008da7a18a37873e78b0320066p@chr14:20649897..20649907, +
1.87e-86FFCP PHASE1:Mm9::chr2:121206667..121206674,-#_ef0848008da7a18a37873e78b0320066p2@Strc
1.87e-86FFCP PHASE2:Mm9::chr14:63099970..63099980,-#_ef0848008da7a18a37873e78b0320066p@chr14:63099970..63099980, -
1.87e-86FFCP PHASE1:Mm9::chr14:47293487..47293493,-#_ef0848008da7a18a37873e78b0320066p@chr14:47293487..47293493, -
1.87e-86FFCP PHASE1:Mm9::chr12:77084875..77084885,+#_ef0848008da7a18a37873e78b0320066p@chr12:77084875..77084885, +
1.87e-86FFCP PHASE2:Mm9::chr19:10536767..10536777,-#_ef0848008da7a18a37873e78b0320066p@chr19:10536767..10536777, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207852..42207876,-#_ef0848008da7a18a37873e78b0320066p2@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:172843813..172843834,-#_ef0848008da7a18a37873e78b0320066p@chr1:172843813..172843834, -
1.87e-86FFCP PHASE2:Mm9::chr15:89215333..89215341,+#_ef0848008da7a18a37873e78b0320066p@chr15:89215333..89215341, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349378..107349390,-#_ef0848008da7a18a37873e78b0320066p1@Otogl
1.87e-86FFCP PHASE1:Mm9::chr5:72652660..72652667,+#_ef0848008da7a18a37873e78b0320066p@chr5:72652660..72652667, +
1.87e-86FFCP PHASE2:Mm9::chr3:31585340..31585360,+#_ef0848008da7a18a37873e78b0320066p@chr3:31585340..31585360, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843796..172843799,-#_ef0848008da7a18a37873e78b0320066p@chr1:172843796..172843799, -
1.87e-86FFCP PHASE2:Mm9::chr5:30710455..30710464,-#_ef0848008da7a18a37873e78b0320066p9@Otof
1.87e-86FFCP PHASE1:Mm9::chr9:42207983..42207995,-#_ef0848008da7a18a37873e78b0320066p3@Tecta
1.87e-86FFCP PHASE1:Mm9::chr7:53496326..53496340,+#_ef0848008da7a18a37873e78b0320066p1@Otog
1.87e-86FFCP PHASE2:Mm9::chr15:97806034..97806061,+#_ef0848008da7a18a37873e78b0320066p@chr15:97806034..97806061, +
1.87e-86FFCP PHASE2:Mm9::chr3:35012397..35012405,+#_ef0848008da7a18a37873e78b0320066p@chr3:35012397..35012405, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556972..115556979,+#_ef0848008da7a18a37873e78b0320066p3@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983102..13983126,+#_ef0848008da7a18a37873e78b0320066p@chr17:13983102..13983126, +
1.87e-86FFCP PHASE1:Mm9::chr3:154459231..154459240,+#_ef0848008da7a18a37873e78b0320066p@chr3:154459231..154459240, +
1.87e-86FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_ef0848008da7a18a37873e78b0320066p@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr9:42206730..42206739,-#_ef0848008da7a18a37873e78b0320066p@chr9:42206730..42206739, -
1.87e-86FFCP PHASE1:Mm9::chr1:154246932..154246939,+#_ef0848008da7a18a37873e78b0320066p7@Glt25d2
1.87e-86FFCP PHASE1:Mm9::chr5:30710455..30710464,-#_ef0848008da7a18a37873e78b0320066p9@Otof
1.87e-86FFCP PHASE1:Mm9::chr13:37195838..37195870,-#_ef0848008da7a18a37873e78b0320066p@chr13:37195838..37195870, -
1.87e-86FFCP PHASE2:Mm9::chr8:125802236..125802251,-#_ef0848008da7a18a37873e78b0320066p3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr9:42207375..42207384,-#_ef0848008da7a18a37873e78b0320066p@chr9:42207375..42207384, -
1.87e-86FFCP PHASE1:Mm9::chr13:76964459..76964469,+#_ef0848008da7a18a37873e78b0320066p15@Mctp1
1.87e-86FFCP PHASE1:Mm9::chr2:67011956..67011967,+#_ef0848008da7a18a37873e78b0320066p1@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr1:93218682..93218691,+#_ef0848008da7a18a37873e78b0320066p2@Espnl
1.87e-86FFCP PHASE2:Mm9::chr11:4689776..4689785,-#_ef0848008da7a18a37873e78b0320066p@chr11:4689776..4689785, -
1.87e-86FFCP PHASE2:Mm9::chr4:154208086..154208123,+#_ef0848008da7a18a37873e78b0320066p@chr4:154208086..154208123, +
1.87e-86FFCP PHASE1:Mm9::chr2:136942131..136942142,-#_ef0848008da7a18a37873e78b0320066p6@Jag1
1.87e-86FFCP PHASE1:Mm9::chr16:45693840..45693856,-#_ef0848008da7a18a37873e78b0320066p1@Tmprss7
1.87e-86FFCP PHASE2:Mm9::chr15:85334335..85334353,+#_ef0848008da7a18a37873e78b0320066p@chr15:85334335..85334353, +
1.87e-86FFCP PHASE2:Mm9::chr6:113251614..113251623,+#_ef0848008da7a18a37873e78b0320066p@chr6:113251614..113251623, +
1.87e-86FFCP PHASE1:Mm9::chr18:38104702..38104718,-#_ef0848008da7a18a37873e78b0320066p@chr18:38104702..38104718, -
1.87e-86FFCP PHASE2:Mm9::chr13:78257454..78257465,+#_ef0848008da7a18a37873e78b0320066p@chr13:78257454..78257465, +
1.87e-86FFCP PHASE2:Mm9::chr13:48087761..48087775,-#_ef0848008da7a18a37873e78b0320066p@chr13:48087761..48087775, -
1.87e-86FFCP PHASE1:Mm9::chr7:141605556..141605563,-#_ef0848008da7a18a37873e78b0320066p@chr7:141605556..141605563, -
1.87e-86FFCP PHASE1:Mm9::chr11:11599532..11599539,-#_ef0848008da7a18a37873e78b0320066p@chr11:11599532..11599539, -










Property "Property value" (as page type) with input value "UBPROP:0000001 "Skeletal elements surrounding the membranous labyrinth of the inner ear. Sensory capsules anterolateral to and confluent with occipital arch.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship loss: part_of occipito-petrosal (AAO:0010831)[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship loss: part_of otic and occipital (AAO:0000993)[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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