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UBERON:0004637

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Name:otic capsule
Definition:"The capsule surrounding the inner ear mechanism; in elasmobranchs, it remains cartilaginous in the adult; in the embryos of higher vertebrates, it is cartilaginous at first but later becomes bony (at approximately 23 weeks in humans)[Biology-Online]. Bilaterally paired cartilage encasing the semicircular canals of the inner ear[ZFA]." http://www.biology-online.org/dictionary/Otic_capsule, ZFA:0001500
Xrefs:
links:

AAO:0010143
SCTID:361515007

VHOG:0000854
Synonyms: "auditory capsule" RELATED [VHOG:0000854]
"otic capsule" EXACT [ZFA:0001500]
"periotic" RELATED []
"periotic capsule" RELATED [VHOG:0000854]
Comments:Taxon notes: developmental relationships need to be checked

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000020(sense organ),UBERON:0004120(mesoderm-derived structure),UBERON:0004121(ectoderm-derived structure),UBERON:0004765(skeletal element),UBERON:0010314(structure with developmental contribution from neural crest)
develops_from:UBERON:0010351(otic capsule cartilage condensation)
part_of:UBERON:0001694(petrous part of temporal bone),UBERON:0001703(neurocranium),UBERON:0001846(internal ear)



Children

part of:UBERON:0010113 (future membranous labyrinth)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004637 (otic capsule), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr19:55256373..55256384,+#_ef0848008da7a18a37873e78b0320066p@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr13:78322370..78322376,-#_ef0848008da7a18a37873e78b0320066p4@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:78523144..78523177,+#_ef0848008da7a18a37873e78b0320066p@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr7:53496326..53496340,+#_ef0848008da7a18a37873e78b0320066p1@Otog
1.87e-86FFCP PHASE2:Mm9::chr5:3909310..3909321,+#_ef0848008da7a18a37873e78b0320066p@chr5:3909310..3909321, +
1.87e-86FFCP PHASE2:Mm9::chr14:31283072..31283081,-#_ef0848008da7a18a37873e78b0320066p@chr14:31283072..31283081, -
1.87e-86FFCP PHASE2:Mm9::chr11:75421384..75421397,+#_ef0848008da7a18a37873e78b0320066p@chr11:75421384..75421397, +
1.87e-86FFCP PHASE1:Mm9::chr1:182528371..182528385,+#_ef0848008da7a18a37873e78b0320066p@chr1:182528371..182528385, +
1.87e-86FFCP PHASE1:Mm9::chr14:31283085..31283097,-#_ef0848008da7a18a37873e78b0320066p@chr14:31283085..31283097, -
1.87e-86FFCP PHASE1:Mm9::chr6:113251614..113251623,+#_ef0848008da7a18a37873e78b0320066p@chr6:113251614..113251623, +
1.87e-86FFCP PHASE1:Mm9::chr19:10536767..10536777,-#_ef0848008da7a18a37873e78b0320066p@chr19:10536767..10536777, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983102..13983126,+#_ef0848008da7a18a37873e78b0320066p@chr17:13983102..13983126, +
1.87e-86FFCP PHASE2:Mm9::chr8:13435173..13435186,+#_ef0848008da7a18a37873e78b0320066p6@Fam70b
1.87e-86FFCP PHASE1:Mm9::chr15:103146966..103146971,-#_ef0848008da7a18a37873e78b0320066p@chr15:103146966..103146971, -
1.87e-86FFCP PHASE2:Mm9::chr10:81091447..81091464,+#_ef0848008da7a18a37873e78b0320066p9@Ankrd24
1.87e-86FFCP PHASE2:Mm9::chr2:67011921..67011934,+#_ef0848008da7a18a37873e78b0320066p2@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207965..42207978,-#_ef0848008da7a18a37873e78b0320066p5@Tecta
1.87e-86FFCP PHASE1:Mm9::chr3:35012397..35012405,+#_ef0848008da7a18a37873e78b0320066p@chr3:35012397..35012405, +
1.87e-86FFCP PHASE1:Mm9::chr15:89215306..89215315,+#_ef0848008da7a18a37873e78b0320066p@chr15:89215306..89215315, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349430..107349440,-#_ef0848008da7a18a37873e78b0320066p3@Otogl
1.87e-86FFCP PHASE1:Mm9::chr12:109905468..109905474,+#_ef0848008da7a18a37873e78b0320066p@chr12:109905468..109905474, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843847..172843880,-#_ef0848008da7a18a37873e78b0320066p@chr1:172843847..172843880, -
1.87e-86FFCP PHASE1:Mm9::chr16:93971325..93971337,-#_ef0848008da7a18a37873e78b0320066p@chr16:93971325..93971337, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207887..42207960,-#_ef0848008da7a18a37873e78b0320066p1@Tecta
1.87e-86FFCP PHASE2:Mm9::chr19:4140290..4140321,+#_ef0848008da7a18a37873e78b0320066p2@Gpr152
1.87e-86FFCP PHASE1:Mm9::chr1:93235253..93235264,+#_ef0848008da7a18a37873e78b0320066p@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr6:30619443..30619450,-#_ef0848008da7a18a37873e78b0320066p13@Tsga14
1.87e-86FFCP PHASE2:Mm9::chr11:120222470..120222516,+#_ef0848008da7a18a37873e78b0320066p2@Fscn2
1.87e-86FFCP PHASE1:Mm9::chr7:109052297..109052300,-#_ef0848008da7a18a37873e78b0320066p2@Tomt
1.87e-86FFCP PHASE1:Mm9::chr11:8405038..8405048,-#_ef0848008da7a18a37873e78b0320066p@chr11:8405038..8405048, -
1.87e-86FFCP PHASE1:Mm9::chr5:30710403..30710406,-#_ef0848008da7a18a37873e78b0320066p10@Otof
1.87e-86FFCP PHASE2:Mm9::chr11:102123554..102123566,+#_ef0848008da7a18a37873e78b0320066p4@BC030867
1.87e-86FFCP PHASE2:Mm9::chr5:28035962..28035983,+#_ef0848008da7a18a37873e78b0320066p@chr5:28035962..28035983, +
1.87e-86FFCP PHASE1:Mm9::chr9:42206745..42206774,-#_ef0848008da7a18a37873e78b0320066p@chr9:42206745..42206774, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011921..67011934,+#_ef0848008da7a18a37873e78b0320066p2@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr3:81012915..81012923,+#_ef0848008da7a18a37873e78b0320066p@chr3:81012915..81012923, +
1.87e-86FFCP PHASE1:Mm9::chr14:63099970..63099980,-#_ef0848008da7a18a37873e78b0320066p@chr14:63099970..63099980, -
1.87e-86FFCP PHASE2:Mm9::chr17:13983179..13983190,+#_ef0848008da7a18a37873e78b0320066p@chr17:13983179..13983190, +
1.87e-86FFCP PHASE1:Mm9::chr17:31335869..31335899,-#_ef0848008da7a18a37873e78b0320066p1@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr9:66860888..66860899,+#_ef0848008da7a18a37873e78b0320066p@chr9:66860888..66860899, +
1.87e-86FFCP PHASE2:Mm9::chr9:42206784..42206793,-#_ef0848008da7a18a37873e78b0320066p@chr9:42206784..42206793, -
1.87e-86FFCP PHASE2:Mm9::chr19:55255289..55255299,+#_ef0848008da7a18a37873e78b0320066p2@Tectb
1.87e-86FFCP PHASE2:Mm9::chr5:21371424..21371435,-#_ef0848008da7a18a37873e78b0320066p2@Slc26a5
1.87e-86FFCP PHASE1:Mm9::chr2:128881546..128881553,-#_ef0848008da7a18a37873e78b0320066p@chr2:128881546..128881553, -
1.87e-86FFCP PHASE2:Mm9::chr13:78257518..78257522,+#_ef0848008da7a18a37873e78b0320066p@chr13:78257518..78257522, +
1.87e-86FFCP PHASE1:Mm9::chrX:154140800..154140810,+#_ef0848008da7a18a37873e78b0320066p@chrX:154140800..154140810, +
1.87e-86FFCP PHASE2:Mm9::chr1:16651649..16651655,+#_ef0848008da7a18a37873e78b0320066p@chr1:16651649..16651655, +
1.87e-86FFCP PHASE1:Mm9::chr3:81012915..81012923,+#_ef0848008da7a18a37873e78b0320066p@chr3:81012915..81012923, +
1.87e-86FFCP PHASE2:Mm9::chr2:29935952..29935993,+#_ef0848008da7a18a37873e78b0320066p7@Pkn3
1.87e-86FFCP PHASE1:Mm9::chr14:47293487..47293493,-#_ef0848008da7a18a37873e78b0320066p@chr14:47293487..47293493, -
1.87e-86FFCP PHASE1:Mm9::chr12:77084875..77084885,+#_ef0848008da7a18a37873e78b0320066p@chr12:77084875..77084885, +
1.87e-86FFCP PHASE2:Mm9::chr1:93235228..93235249,+#_ef0848008da7a18a37873e78b0320066p@chr1:93235228..93235249, +
1.87e-86FFCP PHASE2:Mm9::chr15:12848147..12848162,+#_ef0848008da7a18a37873e78b0320066p@chr15:12848147..12848162, +
1.87e-86FFCP PHASE1:Mm9::chr3:58626291..58626298,-#_ef0848008da7a18a37873e78b0320066p@chr3:58626291..58626298, -
1.87e-86FFCP PHASE2:Mm9::chr11:8405038..8405048,-#_ef0848008da7a18a37873e78b0320066p@chr11:8405038..8405048, -
1.87e-86FFCP PHASE1:Mm9::chr7:133957514..133957529,+#_ef0848008da7a18a37873e78b0320066p@chr7:133957514..133957529, +
1.87e-86FFCP PHASE2:Mm9::chr7:109265277..109265288,-#_ef0848008da7a18a37873e78b0320066p4@Chrna10
1.87e-86FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_ef0848008da7a18a37873e78b0320066p@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr19:21028739..21028785,-#_ef0848008da7a18a37873e78b0320066p1@Tmc1
1.87e-86FFCP PHASE2:Mm9::chr10:107349430..107349440,-#_ef0848008da7a18a37873e78b0320066p3@Otogl
1.87e-86FFCP PHASE1:Mm9::chr18:81314626..81314636,+#_ef0848008da7a18a37873e78b0320066p@chr18:81314626..81314636, +
1.87e-86FFCP PHASE1:Mm9::chr9:42208142..42208157,-#_ef0848008da7a18a37873e78b0320066p10@Tecta
1.87e-86FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_ef0848008da7a18a37873e78b0320066p2@9230102O04Rik
1.87e-86FFCP PHASE1:Mm9::chr13:37195838..37195870,-#_ef0848008da7a18a37873e78b0320066p@chr13:37195838..37195870, -
1.87e-86FFCP PHASE2:Mm9::chr14:102297728..102297742,+#_ef0848008da7a18a37873e78b0320066p@chr14:102297728..102297742, +
1.87e-86FFCP PHASE1:Mm9::chr13:76964459..76964469,+#_ef0848008da7a18a37873e78b0320066p15@Mctp1
1.87e-86FFCP PHASE2:Mm9::chr9:42207792..42207805,-#_ef0848008da7a18a37873e78b0320066p11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr10:107349309..107349318,-#_ef0848008da7a18a37873e78b0320066p4@Otogl
1.87e-86FFCP PHASE2:Mm9::chr15:89215306..89215315,+#_ef0848008da7a18a37873e78b0320066p@chr15:89215306..89215315, +
1.87e-86FFCP PHASE2:Mm9::chr7:109052262..109052291,-#_ef0848008da7a18a37873e78b0320066p1@Tomt
1.87e-86FFCP PHASE1:Mm9::chr5:3909310..3909321,+#_ef0848008da7a18a37873e78b0320066p@chr5:3909310..3909321, +
1.87e-86FFCP PHASE1:Mm9::chr4:115556972..115556979,+#_ef0848008da7a18a37873e78b0320066p3@Kncn
1.87e-86FFCP PHASE2:Mm9::chr5:30710403..30710406,-#_ef0848008da7a18a37873e78b0320066p10@Otof
1.87e-86FFCP PHASE1:Mm9::chr16:45693840..45693856,-#_ef0848008da7a18a37873e78b0320066p1@Tmprss7
1.87e-86FFCP PHASE1:Mm9::chr9:42207777..42207789,-#_ef0848008da7a18a37873e78b0320066p7@Tecta
1.87e-86FFCP PHASE2:Mm9::chr17:31335953..31335957,-#_ef0848008da7a18a37873e78b0320066p3@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr19:4140290..4140321,+#_ef0848008da7a18a37873e78b0320066p2@Gpr152
1.87e-86FFCP PHASE1:Mm9::chr11:11599532..11599539,-#_ef0848008da7a18a37873e78b0320066p@chr11:11599532..11599539, -
1.87e-86FFCP PHASE2:Mm9::chr12:109905399..109905416,+#_ef0848008da7a18a37873e78b0320066p@chr12:109905399..109905416, +
1.87e-86FFCP PHASE2:Mm9::chr4:101908153..101908163,+#_ef0848008da7a18a37873e78b0320066p@chr4:101908153..101908163, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971357..93971363,-#_ef0848008da7a18a37873e78b0320066p@chr16:93971357..93971363, -
1.87e-86FFCP PHASE1:Mm9::chr1:43454162..43454170,-#_ef0848008da7a18a37873e78b0320066p@chr1:43454162..43454170, -
1.87e-86FFCP PHASE2:Mm9::chr8:13414289..13414295,+#_ef0848008da7a18a37873e78b0320066p@chr8:13414289..13414295, +
1.87e-86FFCP PHASE2:Mm9::chr9:66860888..66860899,+#_ef0848008da7a18a37873e78b0320066p@chr9:66860888..66860899, +
1.87e-86FFCP PHASE2:Mm9::chr2:121206667..121206674,-#_ef0848008da7a18a37873e78b0320066p2@Strc
1.87e-86FFCP PHASE2:Mm9::chr2:53464178..53464186,+#_ef0848008da7a18a37873e78b0320066p@chr2:53464178..53464186, +
1.87e-86FFCP PHASE1:Mm9::chr17:27252925..27252939,+#_ef0848008da7a18a37873e78b0320066p@chr17:27252925..27252939, +
1.87e-86FFCP PHASE2:Mm9::chr6:113251570..113251578,+#_ef0848008da7a18a37873e78b0320066p@chr6:113251570..113251578, +
1.87e-86FFCP PHASE1:Mm9::chr13:78322383..78322395,-#_ef0848008da7a18a37873e78b0320066p2@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr13:76964459..76964469,+#_ef0848008da7a18a37873e78b0320066p15@Mctp1
1.87e-86FFCP PHASE1:Mm9::chr1:182528388..182528403,+#_ef0848008da7a18a37873e78b0320066p@chr1:182528388..182528403, +
1.87e-86FFCP PHASE1:Mm9::chr4:133802857..133802884,+#_ef0848008da7a18a37873e78b0320066p@chr4:133802857..133802884, +
1.87e-86FFCP PHASE1:Mm9::chr19:10536797..10536802,-#_ef0848008da7a18a37873e78b0320066p@chr19:10536797..10536802, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983160..13983167,+#_ef0848008da7a18a37873e78b0320066p@chr17:13983160..13983167, +
1.87e-86FFCP PHASE2:Mm9::chr10:97109753..97109764,+#_ef0848008da7a18a37873e78b0320066p3@Epyc
1.87e-86FFCP PHASE1:Mm9::chr3:100724698..100724706,+#_ef0848008da7a18a37873e78b0320066p@chr3:100724698..100724706, +
1.87e-86FFCP PHASE1:Mm9::chr8:13435173..13435186,+#_ef0848008da7a18a37873e78b0320066p6@Fam70b
1.87e-86FFCP PHASE2:Mm9::chr3:154459184..154459195,+#_ef0848008da7a18a37873e78b0320066p@chr3:154459184..154459195, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011941..67011951,+#_ef0848008da7a18a37873e78b0320066p3@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207983..42207995,-#_ef0848008da7a18a37873e78b0320066p3@Tecta










Property "Property value" (as page type) with input value "UBPROP:0000001 "Skeletal elements surrounding the membranous labyrinth of the inner ear. Sensory capsules anterolateral to and confluent with occipital arch.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship loss: part_of occipito-petrosal (AAO:0010831)[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship loss: part_of otic and occipital (AAO:0000993)[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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