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UBERON:0004907

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Name:lower digestive tract
Namespace:FANTOM
Definition:"the region of the digestive tract extending from the beginning of the intestines to the anus[GO - gut definition]." [Wikipedia:Alimentary_canal#Upper_gastrointestinal_tract]
Xrefs:
links:

EHDAA2:0000726
FMA:49179
galen:LowerGastrointestinalTract
MA:0000917
ncithesaurus:Lower_Gastrointestinal_Tract

SCTID:279973004
Synonyms: "gut" BROAD [GO:0048565]
"lower gastrointestinal tract" EXACT []
"lower GI tract" EXACT []
Comments:WP: small intestine, large intestine, anus. Anal canal not part of LGIT according to FMA, but anus is considered part of LGIT according to WP. Duodenum overlaps both U/L
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0004921(subdivision of digestive tract)
develops_from:UBERON:0001046(hindgut)
part_of:UBERON:0005409(gastrointestinal system)



Children

part of:UBERON:0000059 (large intestine),UBERON:0001154 (vermiform appendix)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004907 (lower digestive tract), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data