UBERON:0004907
From FANTOM5_SSTAR
Name: | lower digestive tract | |
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Namespace: | FANTOM | |
Definition: | "the region of the digestive tract extending from the beginning of the intestines to the anus[GO - gut definition]." [Wikipedia:Alimentary_canal#Upper_gastrointestinal_tract] | |
Xrefs: |
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Synonyms: |
"gut" BROAD [GO:0048565] "lower gastrointestinal tract" EXACT [] "lower GI tract" EXACT [] | |
Comments: | WP: small intestine, large intestine, anus. Anal canal not part of LGIT according to FMA, but anus is considered part of LGIT according to WP. Duodenum overlaps both U/L | |
Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0004921(subdivision of digestive tract) |
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develops_from: | UBERON:0001046(hindgut) |
part_of: | UBERON:0005409(gastrointestinal system) |
Children
part of: | UBERON:0000059 (large intestine),UBERON:0001154 (vermiform appendix) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10067-101I4 (rectum, fetal, donor1)
- 10189-103D9 (appendix, adult)
- 10208-103G1
- 10420-106C6 (colon carcinoma cell line:COLO-320)
- 10469-106I1 (rectal cancer cell line:TT1TKB)
- 10513-107D9 (colon carcinoma cell line:CACO-2)
- 10523-107F1
- 10557-107I8
- 10654-109B6
- 10657-109B9
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004907 (lower digestive tract), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data