UBERON:0007196
From FANTOM5_SSTAR
| Name: | tracheobronchial tree | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "the structure from the trachea, bronchi, and bronchioles that forms the airways that supply air to the lungs. The lining of the tracheobronchial tree consists of ciliated columnar epithelial cells." [Wikipedia:Tracheobronchial_tree] | ||
| Xrefs: |
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| Subset: | organ_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000062(organ),UBERON:0004119(endoderm-derived structure) |
|---|---|
| part_of: | UBERON:0001558(lower respiratory tract) |
Children
| part of: | UBERON:0002185 (bronchus),UBERON:0002186 (bronchiole),CL:0002202 (epithelial cell of tracheobronchial tree),UBERON:0003126 (trachea) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10029-101E2 (trachea, adult, pool1)
- 10058-101H4 (trachea, fetal, donor1)
- 10099-102C9
- 10708-109H6 (alveolar cell carcinoma cell line:SW 1573)
- 10709-109H7 (bronchioalveolar carcinoma cell line:NCI-H358)
- 10715-109I4 (bronchioalveolar carcinoma cell line:NCI-H650)
- 11292-117A5 (Tracheal Epithelial Cells, donor1)
- 11369-118A1 (Tracheal Epithelial Cells, donor2)
- 11441-118I1 (Tracheal Epithelial Cells, donor3)
- 11453-119A4 (Bronchial Epithelial Cell, donor4)
... further results Mouse (Mus musculus)
- 10029-101E2 (trachea, adult, pool1)
- 10058-101H4 (trachea, fetal, donor1)
- 10099-102C9
- 10708-109H6 (alveolar cell carcinoma cell line:SW 1573)
- 10709-109H7 (bronchioalveolar carcinoma cell line:NCI-H358)
- 10715-109I4 (bronchioalveolar carcinoma cell line:NCI-H650)
- 11292-117A5 (Tracheal Epithelial Cells, donor1)
- 11369-118A1 (Tracheal Epithelial Cells, donor2)
- 11441-118I1 (Tracheal Epithelial Cells, donor3)
- 11453-119A4 (Bronchial Epithelial Cell, donor4)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007196 (tracheobronchial tree), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.58e-86 | FFCP PHASE1:Mm9::chr13:72401408..72401416,-#_2ffbc88e47a08d0f02469b52883ae548 | p@chr13:72401408..72401416, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr15:101258041..101258052,+#_2ffbc88e47a08d0f02469b52883ae548 | p@chr15:101258041..101258052, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr1:108303887..108303893,+#_2ffbc88e47a08d0f02469b52883ae548 | p@chr1:108303887..108303893, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr1:151954385..151954387,+#_2ffbc88e47a08d0f02469b52883ae548 | p@chr1:151954385..151954387, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr11:100006864..100006873,+#_2ffbc88e47a08d0f02469b52883ae548 | p@chr11:100006864..100006873, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr11:96608719..96608730,-#_2ffbc88e47a08d0f02469b52883ae548 | p1@ENSMUST00000170876, p1@uc011ydj.1 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr5:135420996..135421000,+#_2ffbc88e47a08d0f02469b52883ae548 | p@chr5:135420996..135421000, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr2:60538178..60538182,-#_2ffbc88e47a08d0f02469b52883ae548 | p@chr2:60538178..60538182, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr12:17549752..17549763,+#_2ffbc88e47a08d0f02469b52883ae548 | p@chr12:17549752..17549763, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr17:25885558..25885567,+#_2ffbc88e47a08d0f02469b52883ae548 | p@chr17:25885558..25885567, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr6:147205603..147205610,+#_2ffbc88e47a08d0f02469b52883ae548 | p@chr6:147205603..147205610, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr13:115722413..115722430,+#_2ffbc88e47a08d0f02469b52883ae548 | p@chr13:115722413..115722430, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr2:164393992..164394012,-#_2ffbc88e47a08d0f02469b52883ae548 | p@chr2:164393992..164394012, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr16:32641594..32641601,+#_2ffbc88e47a08d0f02469b52883ae548 | p@chr16:32641594..32641601, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr4:88696177..88696184,+#_2ffbc88e47a08d0f02469b52883ae548 | p2@Gm12603 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr16:32641594..32641601,+#_2ffbc88e47a08d0f02469b52883ae548 | p@chr16:32641594..32641601, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr9:110941233..110941240,+#_2ffbc88e47a08d0f02469b52883ae548 | p@chr9:110941233..110941240, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr6:147338308..147338339,-#_2ffbc88e47a08d0f02469b52883ae548 | p@chr6:147338308..147338339, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr5:91198876..91198885,+#_2ffbc88e47a08d0f02469b52883ae548 | p@chr5:91198876..91198885, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr11:96608719..96608730,-#_2ffbc88e47a08d0f02469b52883ae548 | p1@ENSMUST00000170876, p1@uc011ydj.1 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr12:17549752..17549763,+#_2ffbc88e47a08d0f02469b52883ae548 | p@chr12:17549752..17549763, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr3:89487103..89487111,-#_2ffbc88e47a08d0f02469b52883ae548 | p@chr3:89487103..89487111, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr4:88563185..88563192,-#_2ffbc88e47a08d0f02469b52883ae548 | p@chr4:88563185..88563192, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr6:147205677..147205683,+#_2ffbc88e47a08d0f02469b52883ae548 | p@chr6:147205677..147205683, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr9:110941246..110941254,+#_2ffbc88e47a08d0f02469b52883ae548 | p@chr9:110941246..110941254, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr2:164389604..164389615,+#_2ffbc88e47a08d0f02469b52883ae548 | p@chr2:164389604..164389615, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr6:147338308..147338339,-#_2ffbc88e47a08d0f02469b52883ae548 | p@chr6:147338308..147338339, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr13:115644652..115644657,-#_2ffbc88e47a08d0f02469b52883ae548 | p@chr13:115644652..115644657, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr5:91199084..91199088,-#_2ffbc88e47a08d0f02469b52883ae548 | p@chr5:91199084..91199088, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr4:88696144..88696152,+#_2ffbc88e47a08d0f02469b52883ae548 | p3@Gm12603 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr11:4165247..4165267,+#_2ffbc88e47a08d0f02469b52883ae548 | p@chr11:4165247..4165267, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr9:110941233..110941240,+#_2ffbc88e47a08d0f02469b52883ae548 | p@chr9:110941233..110941240, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr11:86461733..86461747,-#_2ffbc88e47a08d0f02469b52883ae548 | p@chr11:86461733..86461747, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr15:101258041..101258052,+#_2ffbc88e47a08d0f02469b52883ae548 | p@chr15:101258041..101258052, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr3:89487103..89487111,-#_2ffbc88e47a08d0f02469b52883ae548 | p@chr3:89487103..89487111, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr5:91198876..91198885,+#_2ffbc88e47a08d0f02469b52883ae548 | p@chr5:91198876..91198885, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr5:135420996..135421000,+#_2ffbc88e47a08d0f02469b52883ae548 | p@chr5:135420996..135421000, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr1:151954385..151954387,+#_2ffbc88e47a08d0f02469b52883ae548 | p@chr1:151954385..151954387, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr13:72401408..72401416,-#_2ffbc88e47a08d0f02469b52883ae548 | p@chr13:72401408..72401416, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr2:60538178..60538182,-#_2ffbc88e47a08d0f02469b52883ae548 | p@chr2:60538178..60538182, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr2:164393992..164394012,-#_2ffbc88e47a08d0f02469b52883ae548 | p@chr2:164393992..164394012, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr5:135422125..135422141,-#_2ffbc88e47a08d0f02469b52883ae548 | p@chr5:135422125..135422141, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr11:100006864..100006873,+#_2ffbc88e47a08d0f02469b52883ae548 | p@chr11:100006864..100006873, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr6:147205603..147205610,+#_2ffbc88e47a08d0f02469b52883ae548 | p@chr6:147205603..147205610, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr13:115644652..115644657,-#_2ffbc88e47a08d0f02469b52883ae548 | p@chr13:115644652..115644657, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr4:88696177..88696184,+#_2ffbc88e47a08d0f02469b52883ae548 | p2@Gm12603 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr11:4165247..4165267,+#_2ffbc88e47a08d0f02469b52883ae548 | p@chr11:4165247..4165267, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr9:110941246..110941254,+#_2ffbc88e47a08d0f02469b52883ae548 | p@chr9:110941246..110941254, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr17:25885558..25885567,+#_2ffbc88e47a08d0f02469b52883ae548 | p@chr17:25885558..25885567, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr11:86461733..86461747,-#_2ffbc88e47a08d0f02469b52883ae548 | p@chr11:86461733..86461747, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr5:91199084..91199088,-#_2ffbc88e47a08d0f02469b52883ae548 | p@chr5:91199084..91199088, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr1:108303887..108303893,+#_2ffbc88e47a08d0f02469b52883ae548 | p@chr1:108303887..108303893, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr13:115722413..115722430,+#_2ffbc88e47a08d0f02469b52883ae548 | p@chr13:115722413..115722430, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr4:88563185..88563192,-#_2ffbc88e47a08d0f02469b52883ae548 | p@chr4:88563185..88563192, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr6:147205677..147205683,+#_2ffbc88e47a08d0f02469b52883ae548 | p@chr6:147205677..147205683, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr2:164389604..164389615,+#_2ffbc88e47a08d0f02469b52883ae548 | p@chr2:164389604..164389615, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr5:135422125..135422141,-#_2ffbc88e47a08d0f02469b52883ae548 | p@chr5:135422125..135422141, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr4:88696144..88696152,+#_2ffbc88e47a08d0f02469b52883ae548 | p3@Gm12603 |
| 1.33e-65 | FFCP PHASE2:Mm9::chr19:47932377..47932386,-#_0f50f82e1aa339921e9a97292328a978 | p@chr19:47932377..47932386, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chr6:147212620..147212625,+#_0f50f82e1aa339921e9a97292328a978 | p@chr6:147212620..147212625, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr3:121437538..121437546,+#_0f50f82e1aa339921e9a97292328a978 | p@chr3:121437538..121437546, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr14:31386795..31386797,-#_0f50f82e1aa339921e9a97292328a978 | p@chr14:31386795..31386797, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chr11:100002128..100002131,+#_0f50f82e1aa339921e9a97292328a978 | p@chr11:100002128..100002131, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr11:29642912..29642916,-#_0f50f82e1aa339921e9a97292328a978 | p@chr11:29642912..29642916, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chrX:20383628..20383635,+#_0f50f82e1aa339921e9a97292328a978 | p@chrX:20383628..20383635, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr19:47932377..47932386,-#_0f50f82e1aa339921e9a97292328a978 | p@chr19:47932377..47932386, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chr14:31386795..31386797,-#_0f50f82e1aa339921e9a97292328a978 | p@chr14:31386795..31386797, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chr11:29642912..29642916,-#_0f50f82e1aa339921e9a97292328a978 | p@chr11:29642912..29642916, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chr19:47939269..47939279,-#_0f50f82e1aa339921e9a97292328a978 | p@chr19:47939269..47939279, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chr3:121437587..121437593,+#_0f50f82e1aa339921e9a97292328a978 | p@chr3:121437587..121437593, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr14:34905716..34905718,+#_0f50f82e1aa339921e9a97292328a978 | p@chr14:34905716..34905718, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr3:121437587..121437593,+#_0f50f82e1aa339921e9a97292328a978 | p@chr3:121437587..121437593, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr11:4164303..4164316,+#_0f50f82e1aa339921e9a97292328a978 | p@chr11:4164303..4164316, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chrX:20383628..20383635,+#_0f50f82e1aa339921e9a97292328a978 | p@chrX:20383628..20383635, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr11:4164303..4164316,+#_0f50f82e1aa339921e9a97292328a978 | p@chr11:4164303..4164316, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr11:100002128..100002131,+#_0f50f82e1aa339921e9a97292328a978 | p@chr11:100002128..100002131, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr14:34905716..34905718,+#_0f50f82e1aa339921e9a97292328a978 | p@chr14:34905716..34905718, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr2:144564146..144564166,+#_0f50f82e1aa339921e9a97292328a978 | p3@Dtd1 |
| 1.33e-65 | FFCP PHASE1:Mm9::chr3:90392458..90392472,+#_0f50f82e1aa339921e9a97292328a978 | p@chr3:90392458..90392472, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr2:144564146..144564166,+#_0f50f82e1aa339921e9a97292328a978 | p3@Dtd1 |
| 1.33e-65 | FFCP PHASE2:Mm9::chr6:147212620..147212625,+#_0f50f82e1aa339921e9a97292328a978 | p@chr6:147212620..147212625, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr3:90392458..90392472,+#_0f50f82e1aa339921e9a97292328a978 | p@chr3:90392458..90392472, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr19:47939269..47939279,-#_0f50f82e1aa339921e9a97292328a978 | p@chr19:47939269..47939279, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chr3:121437538..121437546,+#_0f50f82e1aa339921e9a97292328a978 | p@chr3:121437538..121437546, + |
| 6.04e-65 | FFCP PHASE1:Mm9::chr1:90456476..90456498,+#_d7fe8415242d053b7fe7be021c7ec8fb | p@chr1:90456476..90456498, + |
| 6.04e-65 | FFCP PHASE2:Mm9::chr15:38385124..38385138,+#_d7fe8415242d053b7fe7be021c7ec8fb | p@chr15:38385124..38385138, + |
| 6.04e-65 | FFCP PHASE2:Mm9::chr19:47928736..47928764,+#_d7fe8415242d053b7fe7be021c7ec8fb | p@chr19:47928736..47928764, + |
| 6.04e-65 | FFCP PHASE2:Mm9::chr17:25888467..25888513,-#_d7fe8415242d053b7fe7be021c7ec8fb | p@chr17:25888467..25888513, - |
| 6.04e-65 | FFCP PHASE1:Mm9::chr15:38385124..38385138,+#_d7fe8415242d053b7fe7be021c7ec8fb | p@chr15:38385124..38385138, + |
| 6.04e-65 | FFCP PHASE1:Mm9::chr19:47928736..47928764,+#_d7fe8415242d053b7fe7be021c7ec8fb | p@chr19:47928736..47928764, + |
| 6.04e-65 | FFCP PHASE2:Mm9::chr1:90456476..90456498,+#_d7fe8415242d053b7fe7be021c7ec8fb | p@chr1:90456476..90456498, + |
| 6.04e-65 | FFCP PHASE1:Mm9::chr17:25888467..25888513,-#_d7fe8415242d053b7fe7be021c7ec8fb | p@chr17:25888467..25888513, - |
| 4.9e-53 | FFCP PHASE1:Mm9::chr8:32217083..32217090,+#_4ac77f64f8e4c2a62220e624519daee6 | p@chr8:32217083..32217090, + |
| 4.9e-53 | FFCP PHASE2:Mm9::chr11:94958540..94958582,+#_4ac77f64f8e4c2a62220e624519daee6 | p@chr11:94958540..94958582, + |
| 4.9e-53 | FFCP PHASE2:Mm9::chr6:147212455..147212462,-#_4ac77f64f8e4c2a62220e624519daee6 | p6@Pthlh |
| 4.9e-53 | FFCP PHASE2:Mm9::chr5:103804464..103804467,+#_4ac77f64f8e4c2a62220e624519daee6 | p@chr5:103804464..103804467, + |
| 4.9e-53 | FFCP PHASE2:Mm9::chrX:163645025..163645028,+#_4ac77f64f8e4c2a62220e624519daee6 | p@chrX:163645025..163645028, + |
| 4.9e-53 | FFCP PHASE1:Mm9::chr12:8799233..8799252,+#_4ac77f64f8e4c2a62220e624519daee6 | p@chr12:8799233..8799252, + |
| 4.9e-53 | FFCP PHASE2:Mm9::chr7:121866295..121866309,+#_4ac77f64f8e4c2a62220e624519daee6 | p@chr7:121866295..121866309, + |
| 4.9e-53 | FFCP PHASE1:Mm9::chr17:71105425..71105430,+#_4ac77f64f8e4c2a62220e624519daee6 | p@chr17:71105425..71105430, + |
