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UBERON:0009955

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Name:neurogenic placode
Namespace:FANTOM
Definition:"Cranial placode with neurogenic potential[cjm]. Neurogenic placodes are transient ectodermal thickenings that form at the border of the neural plate and epidermis and give rise to sensory neurons of the cranial ganglia[ZFA]. The neurogenic placodes give rise to parts of various nerves and ganglia, the olfactory organ, parietal eye, parts of the inner ear, and the lateral line. There are 2 major series of neurogenic placodes, the dorsolateral and ventrolateral or epibranchial[PMID]" [PMID:11523831, Wikipedia:Neurogenic_placodes, ZFA:0001309]
Xrefs:
links:

TAO:0001309

ZFA:0001309
Synonyms: "neurogenic placodes" EXACT PLURAL [ZFA:0001309]
"placodae neurogenicae" RELATED LATIN [Wikipedia:Neurogenic_placodes]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002546(cranial placode)



Children

is a:UBERON:0003050 (olfactory placode),UBERON:0003067 (dorsolateral placode)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009955 (neurogenic placode), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr9:42207998..42208009,-#_3a60b0cd6868b4b766bca2e34977f532p6@Tecta
1.87e-86FFCP PHASE1:Mm9::chr3:154459231..154459240,+#_3a60b0cd6868b4b766bca2e34977f532p@chr3:154459231..154459240, +
1.87e-86FFCP PHASE1:Mm9::chr13:37195838..37195870,-#_3a60b0cd6868b4b766bca2e34977f532p@chr13:37195838..37195870, -
1.87e-86FFCP PHASE2:Mm9::chr13:43699228..43699239,+#_3a60b0cd6868b4b766bca2e34977f532p@chr13:43699228..43699239, +
1.87e-86FFCP PHASE2:Mm9::chr15:58022966..58022995,-#_3a60b0cd6868b4b766bca2e34977f532p@chr15:58022966..58022995, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207397..42207408,-#_3a60b0cd6868b4b766bca2e34977f532p@chr9:42207397..42207408, -
1.87e-86FFCP PHASE1:Mm9::chr8:125802236..125802251,-#_3a60b0cd6868b4b766bca2e34977f532p3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr1:154246932..154246939,+#_3a60b0cd6868b4b766bca2e34977f532p7@Glt25d2
1.87e-86FFCP PHASE1:Mm9::chr14:102297747..102297765,+#_3a60b0cd6868b4b766bca2e34977f532p@chr14:102297747..102297765, +
1.87e-86FFCP PHASE1:Mm9::chr9:92087926..92087938,+#_3a60b0cd6868b4b766bca2e34977f532p2@Plscr5
1.87e-86FFCP PHASE1:Mm9::chr5:30710455..30710464,-#_3a60b0cd6868b4b766bca2e34977f532p9@Otof
1.87e-86FFCP PHASE2:Mm9::chrX:154140781..154140788,+#_3a60b0cd6868b4b766bca2e34977f532p@chrX:154140781..154140788, +
1.87e-86FFCP PHASE1:Mm9::chr2:67011956..67011967,+#_3a60b0cd6868b4b766bca2e34977f532p1@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_3a60b0cd6868b4b766bca2e34977f532p@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349392..107349413,-#_3a60b0cd6868b4b766bca2e34977f532p2@Otogl
1.87e-86FFCP PHASE1:Mm9::chr17:31335953..31335957,-#_3a60b0cd6868b4b766bca2e34977f532p3@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr9:42207397..42207408,-#_3a60b0cd6868b4b766bca2e34977f532p@chr9:42207397..42207408, -
1.87e-86FFCP PHASE2:Mm9::chr9:41495920..41495928,-#_3a60b0cd6868b4b766bca2e34977f532p@chr9:41495920..41495928, -
1.87e-86FFCP PHASE1:Mm9::chr2:136942131..136942142,-#_3a60b0cd6868b4b766bca2e34977f532p6@Jag1
1.87e-86FFCP PHASE1:Mm9::chr11:11599532..11599539,-#_3a60b0cd6868b4b766bca2e34977f532p@chr11:11599532..11599539, -
1.87e-86FFCP PHASE2:Mm9::chr4:133802857..133802884,+#_3a60b0cd6868b4b766bca2e34977f532p@chr4:133802857..133802884, +
1.87e-86FFCP PHASE1:Mm9::chr18:38104702..38104718,-#_3a60b0cd6868b4b766bca2e34977f532p@chr18:38104702..38104718, -
1.87e-86FFCP PHASE1:Mm9::chr10:107349309..107349318,-#_3a60b0cd6868b4b766bca2e34977f532p4@Otogl
1.87e-86FFCP PHASE2:Mm9::chr13:78322383..78322395,-#_3a60b0cd6868b4b766bca2e34977f532p2@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528388..182528403,+#_3a60b0cd6868b4b766bca2e34977f532p@chr1:182528388..182528403, +
1.87e-86FFCP PHASE1:Mm9::chr7:141605556..141605563,-#_3a60b0cd6868b4b766bca2e34977f532p@chr7:141605556..141605563, -
1.87e-86FFCP PHASE1:Mm9::chr1:194818647..194818660,-#_3a60b0cd6868b4b766bca2e34977f532p@chr1:194818647..194818660, -
1.87e-86FFCP PHASE1:Mm9::chr19:22767090..22767099,+#_3a60b0cd6868b4b766bca2e34977f532p18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr8:13425469..13425503,+#_3a60b0cd6868b4b766bca2e34977f532p@chr8:13425469..13425503, +
1.87e-86FFCP PHASE2:Mm9::chr10:80806020..80806031,-#_3a60b0cd6868b4b766bca2e34977f532p3@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr19:55255206..55255223,+#_3a60b0cd6868b4b766bca2e34977f532p1@Tectb
1.87e-86FFCP PHASE1:Mm9::chr13:78257491..78257498,+#_3a60b0cd6868b4b766bca2e34977f532p@chr13:78257491..78257498, +
1.87e-86FFCP PHASE2:Mm9::chr10:67371994..67372010,+#_3a60b0cd6868b4b766bca2e34977f532p@chr10:67371994..67372010, +
1.87e-86FFCP PHASE2:Mm9::chr15:65641779..65641790,+#_3a60b0cd6868b4b766bca2e34977f532p@chr15:65641779..65641790, +
1.87e-86FFCP PHASE1:Mm9::chr6:113251570..113251578,+#_3a60b0cd6868b4b766bca2e34977f532p@chr6:113251570..113251578, +
1.87e-86FFCP PHASE1:Mm9::chr2:9811162..9811171,-#_3a60b0cd6868b4b766bca2e34977f532p2@9230102O04Rik
1.87e-86FFCP PHASE2:Mm9::chr14:63099970..63099980,-#_3a60b0cd6868b4b766bca2e34977f532p@chr14:63099970..63099980, -
1.87e-86FFCP PHASE2:Mm9::chr19:10536767..10536777,-#_3a60b0cd6868b4b766bca2e34977f532p@chr19:10536767..10536777, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207852..42207876,-#_3a60b0cd6868b4b766bca2e34977f532p2@Tecta
1.87e-86FFCP PHASE1:Mm9::chr8:13425469..13425503,+#_3a60b0cd6868b4b766bca2e34977f532p@chr8:13425469..13425503, +
1.87e-86FFCP PHASE1:Mm9::chr1:16651649..16651655,+#_3a60b0cd6868b4b766bca2e34977f532p@chr1:16651649..16651655, +
1.87e-86FFCP PHASE2:Mm9::chr15:89215333..89215341,+#_3a60b0cd6868b4b766bca2e34977f532p@chr15:89215333..89215341, +
1.87e-86FFCP PHASE2:Mm9::chr3:31585340..31585360,+#_3a60b0cd6868b4b766bca2e34977f532p@chr3:31585340..31585360, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843796..172843799,-#_3a60b0cd6868b4b766bca2e34977f532p@chr1:172843796..172843799, -
1.87e-86FFCP PHASE2:Mm9::chr5:30710455..30710464,-#_3a60b0cd6868b4b766bca2e34977f532p9@Otof
1.87e-86FFCP PHASE1:Mm9::chr2:75320183..75320189,+#_3a60b0cd6868b4b766bca2e34977f532p@chr2:75320183..75320189, +
1.87e-86FFCP PHASE1:Mm9::chr1:93218694..93218705,+#_3a60b0cd6868b4b766bca2e34977f532p1@Espnl
1.87e-86FFCP PHASE2:Mm9::chr15:97806034..97806061,+#_3a60b0cd6868b4b766bca2e34977f532p@chr15:97806034..97806061, +
1.87e-86FFCP PHASE2:Mm9::chr14:20649897..20649907,+#_3a60b0cd6868b4b766bca2e34977f532p@chr14:20649897..20649907, +
1.87e-86FFCP PHASE2:Mm9::chr10:108316802..108316807,-#_3a60b0cd6868b4b766bca2e34977f532p@chr10:108316802..108316807, -
1.87e-86FFCP PHASE2:Mm9::chr3:35012397..35012405,+#_3a60b0cd6868b4b766bca2e34977f532p@chr3:35012397..35012405, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556972..115556979,+#_3a60b0cd6868b4b766bca2e34977f532p3@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983102..13983126,+#_3a60b0cd6868b4b766bca2e34977f532p@chr17:13983102..13983126, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207852..42207876,-#_3a60b0cd6868b4b766bca2e34977f532p2@Tecta
1.87e-86FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_3a60b0cd6868b4b766bca2e34977f532p@chr15:65641779..65641790, +
1.87e-86FFCP PHASE2:Mm9::chr9:42206730..42206739,-#_3a60b0cd6868b4b766bca2e34977f532p@chr9:42206730..42206739, -
1.87e-86FFCP PHASE2:Mm9::chr8:125802236..125802251,-#_3a60b0cd6868b4b766bca2e34977f532p3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr1:60561636..60561645,-#_3a60b0cd6868b4b766bca2e34977f532p@chr1:60561636..60561645, -
1.87e-86FFCP PHASE1:Mm9::chr6:30619443..30619450,-#_3a60b0cd6868b4b766bca2e34977f532p13@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr15:12848147..12848162,+#_3a60b0cd6868b4b766bca2e34977f532p@chr15:12848147..12848162, +
1.87e-86FFCP PHASE2:Mm9::chr1:93218682..93218691,+#_3a60b0cd6868b4b766bca2e34977f532p2@Espnl
1.87e-86FFCP PHASE2:Mm9::chr11:4689776..4689785,-#_3a60b0cd6868b4b766bca2e34977f532p@chr11:4689776..4689785, -
1.87e-86FFCP PHASE2:Mm9::chr4:154208086..154208123,+#_3a60b0cd6868b4b766bca2e34977f532p@chr4:154208086..154208123, +
1.87e-86FFCP PHASE1:Mm9::chr6:86745686..86745727,-#_3a60b0cd6868b4b766bca2e34977f532p@chr6:86745686..86745727, -
1.87e-86FFCP PHASE1:Mm9::chr11:114603036..114603048,+#_3a60b0cd6868b4b766bca2e34977f532p@chr11:114603036..114603048, +
1.87e-86FFCP PHASE2:Mm9::chr15:85334335..85334353,+#_3a60b0cd6868b4b766bca2e34977f532p@chr15:85334335..85334353, +
1.87e-86FFCP PHASE2:Mm9::chr6:113251614..113251623,+#_3a60b0cd6868b4b766bca2e34977f532p@chr6:113251614..113251623, +
1.87e-86FFCP PHASE1:Mm9::chr3:69811590..69811601,+#_3a60b0cd6868b4b766bca2e34977f532p1@Otol1
1.87e-86FFCP PHASE2:Mm9::chr13:78257454..78257465,+#_3a60b0cd6868b4b766bca2e34977f532p@chr13:78257454..78257465, +
1.87e-86FFCP PHASE2:Mm9::chr13:48087761..48087775,-#_3a60b0cd6868b4b766bca2e34977f532p@chr13:48087761..48087775, -
1.87e-86FFCP PHASE2:Mm9::chr3:69811606..69811616,+#_3a60b0cd6868b4b766bca2e34977f532p2@Otol1
1.87e-86FFCP PHASE1:Mm9::chr17:13983198..13983203,+#_3a60b0cd6868b4b766bca2e34977f532p@chr17:13983198..13983203, +
1.87e-86FFCP PHASE2:Mm9::chr18:81327205..81327211,+#_3a60b0cd6868b4b766bca2e34977f532p@chr18:81327205..81327211, +
1.87e-86FFCP PHASE2:Mm9::chr11:11599532..11599539,-#_3a60b0cd6868b4b766bca2e34977f532p@chr11:11599532..11599539, -
1.87e-86FFCP PHASE2:Mm9::chr12:77084875..77084885,+#_3a60b0cd6868b4b766bca2e34977f532p@chr12:77084875..77084885, +
1.87e-86FFCP PHASE1:Mm9::chr9:42206730..42206739,-#_3a60b0cd6868b4b766bca2e34977f532p@chr9:42206730..42206739, -
1.87e-86FFCP PHASE1:Mm9::chr2:121206677..121206683,-#_3a60b0cd6868b4b766bca2e34977f532p3@Strc
1.87e-86FFCP PHASE2:Mm9::chr18:38104702..38104718,-#_3a60b0cd6868b4b766bca2e34977f532p@chr18:38104702..38104718, -
1.87e-86FFCP PHASE2:Mm9::chr3:154459246..154459253,+#_3a60b0cd6868b4b766bca2e34977f532p@chr3:154459246..154459253, +
1.87e-86FFCP PHASE2:Mm9::chr9:42208023..42208043,-#_3a60b0cd6868b4b766bca2e34977f532p4@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:172843847..172843880,-#_3a60b0cd6868b4b766bca2e34977f532p@chr1:172843847..172843880, -
1.87e-86FFCP PHASE1:Mm9::chr11:4689837..4689845,-#_3a60b0cd6868b4b766bca2e34977f532p@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr1:63733478..63733491,-#_3a60b0cd6868b4b766bca2e34977f532p1@Dytn
1.87e-86FFCP PHASE1:Mm9::chrX:154140781..154140788,+#_3a60b0cd6868b4b766bca2e34977f532p@chrX:154140781..154140788, +
1.87e-86FFCP PHASE1:Mm9::chr16:96494788..96494801,+#_3a60b0cd6868b4b766bca2e34977f532p12@B3galt5
1.87e-86FFCP PHASE1:Mm9::chr1:94627290..94627299,-#_3a60b0cd6868b4b766bca2e34977f532p@chr1:94627290..94627299, -
1.87e-86FFCP PHASE2:Mm9::chr17:31335869..31335899,-#_3a60b0cd6868b4b766bca2e34977f532p1@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr14:47293487..47293493,-#_3a60b0cd6868b4b766bca2e34977f532p@chr14:47293487..47293493, -
1.87e-86FFCP PHASE1:Mm9::chr9:42208023..42208043,-#_3a60b0cd6868b4b766bca2e34977f532p4@Tecta
1.87e-86FFCP PHASE1:Mm9::chr3:154459246..154459253,+#_3a60b0cd6868b4b766bca2e34977f532p@chr3:154459246..154459253, +
1.87e-86FFCP PHASE2:Mm9::chr6:86745686..86745727,-#_3a60b0cd6868b4b766bca2e34977f532p@chr6:86745686..86745727, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207697..42207705,-#_3a60b0cd6868b4b766bca2e34977f532p@chr9:42207697..42207705, -
1.87e-86FFCP PHASE2:Mm9::chrX:154140800..154140810,+#_3a60b0cd6868b4b766bca2e34977f532p@chrX:154140800..154140810, +
1.87e-86FFCP PHASE1:Mm9::chr1:78523144..78523177,+#_3a60b0cd6868b4b766bca2e34977f532p@chr1:78523144..78523177, +
1.87e-86FFCP PHASE1:Mm9::chr12:13572961..13572974,+#_3a60b0cd6868b4b766bca2e34977f532p@chr12:13572961..13572974, +
1.87e-86FFCP PHASE2:Mm9::chr18:59222033..59222043,+#_3a60b0cd6868b4b766bca2e34977f532p7@A730017C20Rik
1.87e-86FFCP PHASE2:Mm9::chr1:43454162..43454170,-#_3a60b0cd6868b4b766bca2e34977f532p@chr1:43454162..43454170, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349418..107349423,-#_3a60b0cd6868b4b766bca2e34977f532p5@Otogl
1.87e-86FFCP PHASE1:Mm9::chr9:42207697..42207705,-#_3a60b0cd6868b4b766bca2e34977f532p@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr4:63079735..63079745,-#_3a60b0cd6868b4b766bca2e34977f532p@chr4:63079735..63079745, -

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