Personal tools

UBERON:0010712

From FANTOM5_SSTAR

Jump to: navigation, search

Name:limb skeleton subdivision
Namespace:FANTOM
Definition:"Skeletal subdivision that is a segment of the limb skeleton." [VSAO:0005018, VSAO:NI]
Xrefs:
links:
VSAO:0005018
Comments:Editor notes - note the distinction between this and skeleton of limb

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0010912(subdivision of skeleton)
part_of:UBERON:0002101(limb),UBERON:0002091(appendicular skeleton),UBERON:0002101(limb)



Children

is a:UBERON:0004381 (skeleton of limb)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010712 (limb skeleton subdivision), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data