UBERON:0002394: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0002394
|name=bile duct
|namespace=
|def="Duct that carries bile from the liver to the small intestine." [Wikipedia:Bile_duct, ZFA:0001100]
|xref=AAO:...") |
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|is_a=UBERON:0000058;;UBERON:0000077;;UBERON:0003928 | |is_a=UBERON:0000058;;UBERON:0000077;;UBERON:0003928 | ||
|synonym="gall duct" RELATED [BTO:0000122];;"hepatic duct" RELATED [] | |synonym="gall duct" RELATED [BTO:0000122];;"hepatic duct" RELATED [] | ||
|comment=The path is as follows: Bile canaliculi | |comment=The path is as follows: Bile canaliculi 竊� Canals of Hering 竊� interlobular bile ducts 竊� intrahepatic bile ducts 竊� left and right hepatic ducts merge to form 竊� common hepatic duct exits liver and joins 竊� cystic duct (from gall bladder) forming 竊� common bile duct 竊� joins with pancreatic duct 竊� forming ampulla of Vater 竊� enters duodenum [WP] | ||
|alt_id=UBERON:FMA_9706-MA_0000354-XAO_0000134 | |alt_id=UBERON:FMA_9706-MA_0000354-XAO_0000134 | ||
|disjoint_from= | |disjoint_from= | ||
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|part_of=UBERON:0001173;;UBERON:0002294 | |part_of=UBERON:0001173;;UBERON:0002294 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |||
|preceded_by= | |||
}} | }} | ||
Revision as of 17:16, 15 June 2012
| Name: | bile duct | |
|---|---|---|
| Definition: | "Duct that carries bile from the liver to the small intestine." [Wikipedia:Bile_duct, ZFA:0001100] | |
| Xrefs: |
| |
| Synonyms: |
"gall duct" RELATED [BTO:0000122] "hepatic duct" RELATED [] | |
| Comments: | The path is as follows: Bile canaliculi 竊� Canals of Hering 竊� interlobular bile ducts 竊� intrahepatic bile ducts 竊� left and right hepatic ducts merge to form 竊� common hepatic duct exits liver and joins 竊� cystic duct (from gall bladder) forming 竊� common bile duct 竊� joins with pancreatic duct 竊� forming ampulla of Vater 竊� enters duodenum [WP] | |
| Alt_id: | UBERON:FMA_9706-MA_0000354-XAO_0000134 | |
| Subset: | uberon_slim |
200px-Digestive_system_showing_bile_duct.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000058(duct),UBERON:0000077(mixed endoderm/mesoderm-derived structure),UBERON:0003928(digestive system duct) |
|---|---|
| develops_from: | UBERON:0008835(hepatic diverticulum) |
| part_of: | UBERON:0001173(biliary tree),UBERON:0002294(biliary system) |
Children
| is a: | UBERON:0003703 (extrahepatic bile duct),UBERON:0003704 (intrahepatic bile duct),UBERON:0005171 (hepatic duct) |
|---|---|
| derives from: | FF:0103910 (bile duct cancer cell line sample) |
| part of: | UBERON:0004820 (bile duct epithelium) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10417-106C3 (papillotubular adenocarcinoma cell line:TGBC18TKB)
- 10432-106D9 (bile duct carcinoma cell line:HuCCT1)
- 10496-107C1 (bile duct carcinoma cell line:TFK-1)
- 10533-107G2
- 10536-107G5 (cholangiocellular carcinoma cell line:HuH-28)
- 10627-108H6
- 10629-108H8
- 10630-108H9
- 11522-119I1
- 11602-120H9
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002394 (bile duct), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
