UBERON:0007798: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0007798
|name=vascular system
|namespace=
|def=
|xref=BTO:0001085;;EHDAA2:0004520;;MA:0002718;;ncithesaurus:Vascular_System
|is_a=UBERON:0000467
|sy...") |
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|part_of=UBERON:0004535 | |part_of=UBERON:0004535 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
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}} | }} | ||
Revision as of 17:25, 15 June 2012
| Name: | vascular system | |
|---|---|---|
| Xrefs: |
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| Comments: | in both MA and BTO, the arterial system and venous sytem are subtypes of the vascular system |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000467(anatomical system) |
|---|---|
| part_of: | UBERON:0004535(cardiovascular system) |
Children
| is a: | UBERON:0004571 (systemic arterial system),UBERON:0004572 (arterial system),UBERON:0004582 (venous system),UBERON:0008886 (pulmonary vascular system) |
|---|---|
| part of: | UBERON:0002049 (vasculature),UBERON:0006558 (lymphatic part of lymphoid system) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10052-101G7 (aorta, adult, pool1)
- 10190-103E1 (artery, adult)
- 10191-103E2 (vein, adult)
- 10268-104D7 (eye - vitreous humor, donor1)
- 10296-104G8
- 10324-105A9
- 11207-116A1 (Endothelial Cells - Aortic, donor0)
- 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
- 11212-116A6 (Smooth Muscle Cells - Umbilical artery, donor0)
- 11234-116D1 (Smooth Muscle Cells - Brain Vascular, donor1)
... further results Mouse (Mus musculus)
- 10052-101G7 (aorta, adult, pool1)
- 10190-103E1 (artery, adult)
- 10191-103E2 (vein, adult)
- 10268-104D7 (eye - vitreous humor, donor1)
- 10296-104G8
- 10324-105A9
- 11207-116A1 (Endothelial Cells - Aortic, donor0)
- 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
- 11212-116A6 (Smooth Muscle Cells - Umbilical artery, donor0)
- 11234-116D1 (Smooth Muscle Cells - Brain Vascular, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007798 (vascular system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
