UBERON:0007806

Name:	connecting stalk
Definition:	"A bridge of mesoderm connecting the caudal end of the young embryo with the trophoblastic tissues; the precursor of the umbilical cord." [Medical_Dictionary:http\://medical-dictionary.thefreedictionary.com/]
Xrefs:	Expandlinks: BTO:0004705 ncithesaurus:Connecting_Stalk
Comments:	todo - this is currently defined as a bridge of mesoderm, but in EHDAA2 is extraembryonic structure split into mesoderm and blood vessels

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

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Parents

is_a:	UBERON:0000478(extraembryonic structure),UBERON:0004120(mesoderm-derived structure)
develops_from:	UBERON:0005728(extraembryonic mesoderm)

Children

develops from:	UBERON:0002331 (umbilical cord)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

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Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007806 (connecting stalk), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

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P-value	FFCP	Short description

P-value	FFCP	Short description
5.79e-79	FFCP PHASE1:Hg19::chr7:135931480..135931486,+	p@chr7:135931480..135931486, +
5.79e-79	FFCP PHASE2:Hg19::chr10:120921270..120921282,-	p@chr10:120921270..120921282, -
5.79e-79	FFCP PHASE2:Hg19::chr7:135931480..135931486,+	p@chr7:135931480..135931486, +
5.79e-79	FFCP PHASE1:Hg19::chr10:120921270..120921282,-	p@chr10:120921270..120921282, -
2.16e-63	FFCP PHASE1:Hg19::chr1:205744117..205744127,-	p8@RAB7L1
2.16e-63	FFCP PHASE2:Hg19::chr1:205744117..205744127,-	p8@RAB7L1
1.1e-59	FFCP PHASE1:Hg19::chr3:119279086..119279095,+	p@chr3:119279086..119279095, +
1.1e-59	FFCP PHASE2:Hg19::chr7:135735084..135735112,+	p@chr7:135735084..135735112, +
1.1e-59	FFCP PHASE2:Hg19::chr21:18180126..18180130,-	p@chr21:18180126..18180130, -
1.1e-59	FFCP PHASE1:Hg19::chr7:45954667..45954675,-	p42@IGFBP3
1.1e-59	FFCP PHASE2:Hg19::chr9:74997054..74997058,-	p@chr9:74997054..74997058, -
1.1e-59	FFCP PHASE1:Hg19::chr7:106363901..106363915,-	p@chr7:106363901..106363915, -
1.1e-59	FFCP PHASE2:Hg19::chr22:37484406..37484413,+	p@chr22:37484406..37484413, +
1.1e-59	FFCP PHASE1:Hg19::chr2:65209811..65209818,+	p@chr2:65209811..65209818, +
1.1e-59	FFCP PHASE1:Hg19::chr2:148293218..148293252,+	p@chr2:148293218..148293252, +
1.1e-59	FFCP PHASE1:Hg19::chr1:177159780..177159790,-	p@chr1:177159780..177159790, -
1.1e-59	FFCP PHASE1:Hg19::chr21:18179795..18179798,-	p@chr21:18179795..18179798, -
1.1e-59	FFCP PHASE2:Hg19::chr19:49488921..49488932,-	p@chr19:49488921..49488932, -
1.1e-59	FFCP PHASE2:Hg19::chr13:101999642..101999655,-	p@chr13:101999642..101999655, -
1.1e-59	FFCP PHASE1:Hg19::chr9:74995293..74995311,-	p@chr9:74995293..74995311, -
1.1e-59	FFCP PHASE2:Hg19::chr12:130530117..130530125,-	p@chr12:130530117..130530125, -
1.1e-59	FFCP PHASE1:Hg19::chr8:56618992..56618998,+	p@chr8:56618992..56618998, +
1.1e-59	FFCP PHASE1:Hg19::chr2:228216568..228216578,+	p15@MFF
1.1e-59	FFCP PHASE2:Hg19::chr3:111319059..111319101,-	p@chr3:111319059..111319101, -
1.1e-59	FFCP PHASE2:Hg19::chr1:207617923..207617929,-	p@chr1:207617923..207617929, -
1.1e-59	FFCP PHASE1:Hg19::chr20:33691683..33691699,+	p@chr20:33691683..33691699, +
1.1e-59	FFCP PHASE1:Hg19::chr1:234765107..234765117,+	p7@LINC00184
1.1e-59	FFCP PHASE1:Hg19::chr17:64034078..64034124,-	p@chr17:64034078..64034124, -
1.1e-59	FFCP PHASE2:Hg19::chr7:17543537..17543548,-	p@chr7:17543537..17543548, -
1.1e-59	FFCP PHASE1:Hg19::chr19:53511749..53511757,-	p@chr19:53511749..53511757, -
1.1e-59	FFCP PHASE1:Hg19::chr7:135705379..135705388,+	p@chr7:135705379..135705388, +
1.1e-59	FFCP PHASE2:Hg19::chr20:38442120..38442126,+	p@chr20:38442120..38442126, +
1.1e-59	FFCP PHASE2:Hg19::chr11:90524493..90524505,+	p@chr11:90524493..90524505, +
1.1e-59	FFCP PHASE1:Hg19::chr6:138023015..138023024,-	p@chr6:138023015..138023024, -
1.1e-59	FFCP PHASE2:Hg19::chr16:86326031..86326033,+	p@chr16:86326031..86326033, +
1.1e-59	FFCP PHASE2:Hg19::chr11:117957610..117957619,-	p3@LOC100526771
1.1e-59	FFCP PHASE1:Hg19::chr4:6191002..6191007,-	p@chr4:6191002..6191007, -
1.1e-59	FFCP PHASE1:Hg19::chr13:101999642..101999655,-	p@chr13:101999642..101999655, -
1.1e-59	FFCP PHASE2:Hg19::chr6:149490934..149490939,-	p@chr6:149490934..149490939, -
1.1e-59	FFCP PHASE1:Hg19::chr19:7599792..7599797,+	p@chr19:7599792..7599797, +
1.1e-59	FFCP PHASE2:Hg19::chr7:106363860..106363870,-	p@chr7:106363860..106363870, -
1.1e-59	FFCP PHASE2:Hg19::chr10:109197952..109197957,+	p@chr10:109197952..109197957, +
1.1e-59	FFCP PHASE1:Hg19::chr7:142250929..142250940,-	p3@AF430683, p3@AF430684, p3@AF430685
1.1e-59	FFCP PHASE1:Hg19::chr4:167951727..167951732,-	p@chr4:167951727..167951732, -
1.1e-59	FFCP PHASE1:Hg19::chr21:43934831..43934840,+	p@chr21:43934831..43934840, +
1.1e-59	FFCP PHASE2:Hg19::chr2:148293141..148293150,+	p@chr2:148293141..148293150, +
1.1e-59	FFCP PHASE2:Hg19::chr14:76957814..76957826,+	p@chr14:76957814..76957826, +
1.1e-59	FFCP PHASE1:Hg19::chr3:33024873..33024877,-	p@chr3:33024873..33024877, -
1.1e-59	FFCP PHASE1:Hg19::chr19:42682242..42682253,-	p@chr19:42682242..42682253, -
1.1e-59	FFCP PHASE2:Hg19::chr3:119279036..119279047,+	p@chr3:119279036..119279047, +
1.1e-59	FFCP PHASE1:Hg19::chr7:106397632..106397643,+	p@chr7:106397632..106397643, +
1.1e-59	FFCP PHASE1:Hg19::chr4:167748986..167748989,-	p@chr4:167748986..167748989, -
1.1e-59	FFCP PHASE2:Hg19::chr19:53511711..53511720,-	p@chr19:53511711..53511720, -
1.1e-59	FFCP PHASE2:Hg19::chr10:111805635..111805642,-	p@chr10:111805635..111805642, -
1.1e-59	FFCP PHASE1:Hg19::chr9:75002215..75002221,-	p@chr9:75002215..75002221, -
1.1e-59	FFCP PHASE2:Hg19::chr7:135705366..135705371,+	p@chr7:135705366..135705371, +
1.1e-59	FFCP PHASE2:Hg19::chr21:18179708..18179733,-	p@chr21:18179708..18179733, -
1.1e-59	FFCP PHASE1:Hg19::chr2:228216837..228216846,+	p17@MFF
1.1e-59	FFCP PHASE1:Hg19::chr19:31524425..31524444,-	p@chr19:31524425..31524444, -
1.1e-59	FFCP PHASE2:Hg19::chr9:74995216..74995247,-	p@chr9:74995216..74995247, -
1.1e-59	FFCP PHASE1:Hg19::chr20:39574012..39574015,+	p@chr20:39574012..39574015, +
1.1e-59	FFCP PHASE2:Hg19::chr6:87324188..87324195,+	p@chr6:87324188..87324195, +
1.1e-59	FFCP PHASE2:Hg19::chr3:45926316..45926329,-	p@chr3:45926316..45926329, -
1.1e-59	FFCP PHASE1:Hg19::chr8:12548586..12548602,-	p@chr8:12548586..12548602, -
1.1e-59	FFCP PHASE1:Hg19::chr2:148279057..148279078,+	p@chr2:148279057..148279078, +
1.1e-59	FFCP PHASE1:Hg19::chr1:172807491..172807499,-	p@chr1:172807491..172807499, -
1.1e-59	FFCP PHASE1:Hg19::chr14:76957814..76957826,+	p@chr14:76957814..76957826, +
1.1e-59	FFCP PHASE2:Hg19::chrX:109653507..109653518,+	p@chrX:109653507..109653518, +
1.1e-59	FFCP PHASE1:Hg19::chr12:24770576..24770594,-	p@chr12:24770576..24770594, -
1.1e-59	FFCP PHASE2:Hg19::chr5:77713534..77713543,+	p@chr5:77713534..77713543, +
1.1e-59	FFCP PHASE1:Hg19::chr9:74981579..74981583,-	p@chr9:74981579..74981583, -
1.1e-59	FFCP PHASE1:Hg19::chr1:207627342..207627349,+	p3@CR2
1.1e-59	FFCP PHASE1:Hg19::chr8:42248931..42248936,+	p6@VDAC3
1.1e-59	FFCP PHASE1:Hg19::chr10:120924761..120924770,-	p10@SFXN4
1.1e-59	FFCP PHASE1:Hg19::chr19:10987850..10987854,+	p@chr19:10987850..10987854, +
1.1e-59	FFCP PHASE2:Hg19::chr10:15013428..15013456,-	p@chr10:15013428..15013456, -
1.1e-59	FFCP PHASE1:Hg19::chr11:90524493..90524505,+	p@chr11:90524493..90524505, +
1.1e-59	FFCP PHASE2:Hg19::chrX:10129292..10129306,+	p@chrX:10129292..10129306, +
1.1e-59	FFCP PHASE2:Hg19::chr6:150322254..150322291,-	p@chr6:150322254..150322291, -
1.1e-59	FFCP PHASE2:Hg19::chr7:106397597..106397610,+	p@chr7:106397597..106397610, +
1.1e-59	FFCP PHASE2:Hg19::chr6:31150998..31151005,-	p@chr6:31150998..31151005, -
1.1e-59	FFCP PHASE2:Hg19::chr3:153038353..153038371,+	p@chr3:153038353..153038371, +
1.1e-59	FFCP PHASE1:Hg19::chr6:484706..484722,+	p@chr6:484706..484722, +
1.1e-59	FFCP PHASE1:Hg19::chr4:167982726..167982736,-	p@chr4:167982726..167982736, -
1.1e-59	FFCP PHASE2:Hg19::chr6:135486487..135486491,+	p@chr6:135486487..135486491, +
1.1e-59	FFCP PHASE2:Hg19::chr5:146717844..146717861,+	p@chr5:146717844..146717861, +
1.1e-59	FFCP PHASE2:Hg19::chr2:74682916..74682923,+	p@chr2:74682916..74682923, +
1.1e-59	FFCP PHASE2:Hg19::chr2:15651894..15651904,-	p4@NBAS
1.1e-59	FFCP PHASE1:Hg19::chr6:87324200..87324219,+	p@chr6:87324200..87324219, +
1.1e-59	FFCP PHASE1:Hg19::chr3:45926344..45926350,-	p@chr3:45926344..45926350, -
1.1e-59	FFCP PHASE2:Hg19::chr4:167944606..167944610,-	p@chr4:167944606..167944610, -
1.1e-59	FFCP PHASE2:Hg19::chr8:56618992..56618998,+	p@chr8:56618992..56618998, +
1.1e-59	FFCP PHASE2:Hg19::chr2:228216568..228216578,+	p15@MFF
1.1e-59	FFCP PHASE1:Hg19::chr17:1985278..1985290,-	p@chr17:1985278..1985290, -
1.1e-59	FFCP PHASE2:Hg19::chr8:59970765..59970787,-	p@chr8:59970765..59970787, -
1.1e-59	FFCP PHASE1:Hg19::chr12:130530197..130530209,-	p@chr12:130530197..130530209, -
1.1e-59	FFCP PHASE2:Hg19::chr20:33691683..33691699,+	p@chr20:33691683..33691699, +
1.1e-59	FFCP PHASE2:Hg19::chr2:148278743..148278751,+	p@chr2:148278743..148278751, +
1.1e-59	FFCP PHASE2:Hg19::chr7:135738522..135738525,-	p@chr7:135738522..135738525, -
1.1e-59	FFCP PHASE2:Hg19::chr17:40021018..40021028,+	p@chr17:40021018..40021028, +

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