CL:0000807: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{CL
|id=CL:0000807
|name=DN3 thymocyte
|namespace=cell
|def="A thymocyte that has the phenotype CD4-negative, CD8-negative, CD44-negative, and CD25-positive and expressin...") |
No edit summary |
||
| Line 2: | Line 2: | ||
|id=CL:0000807 | |id=CL:0000807 | ||
|name=DN3 thymocyte | |name=DN3 thymocyte | ||
|namespace= | |namespace=efo | ||
|def="A thymocyte that has the phenotype CD4-negative, CD8-negative, CD44-negative, and CD25-positive and expressing the T cell receptor beta-chain in complex with the pre-T cell receptor alpha chain." [GO_REF:0000031, GOC:add, GOC:tfm, ISBN:0781735149] | |def="A thymocyte that has the phenotype CD4-negative, CD8-negative, CD44-negative, and CD25-positive and expressing the T cell receptor beta-chain in complex with the pre-T cell receptor alpha chain." [GO_REF:0000031, GOC:add, GOC:tfm, ISBN:0781735149] | ||
|xref= | |xref= | ||
|is_a=CL:0002489 | |is_a=CL:0000893;;CL:0002489 | ||
|synonym="DN3 alpha-beta immature T lymphocyte" EXACT [];;"DN3 alpha-beta immature T-cell" EXACT [];;"DN3 alpha-beta immature T-lymphocyte" EXACT [];;"DN3 cell" EXACT [];;"DN3 immature T cell" EXACT [];;"double negative 3" EXACT [];;"preT.DN3.Th" EXACT [];;"TN3 cell" EXACT [];;"TN3 thymocyte" EXACT [] | |synonym="DN3 alpha-beta immature T lymphocyte" EXACT [];;"DN3 alpha-beta immature T-cell" EXACT [];;"DN3 alpha-beta immature T-lymphocyte" EXACT [];;"DN3 cell" EXACT [];;"DN3 immature T cell" EXACT [];;"double negative 3" EXACT [];;"preT.DN3.Th" EXACT [];;"TN3 cell" EXACT [];;"TN3 thymocyte" EXACT [] | ||
|comment= | |comment= | ||
| Line 20: | Line 20: | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl | |||
|is_obsolete= | |||
|preceded_by= | |||
}} | }} | ||
Revision as of 17:38, 15 June 2012
| Name: | DN3 thymocyte |
|---|---|
| Namespace: | efo |
| Definition: | "A thymocyte that has the phenotype CD4-negative, CD8-negative, CD44-negative, and CD25-positive and expressing the T cell receptor beta-chain in complex with the pre-T cell receptor alpha chain." [GO_REF:0000031, GOC:add, GOC:tfm, ISBN:0781735149] |
| Synonyms: |
"DN3 alpha-beta immature T lymphocyte" EXACT [] "DN3 alpha-beta immature T-cell" EXACT [] "DN3 alpha-beta immature T-lymphocyte" EXACT [] "DN3 cell" EXACT [] "DN3 immature T cell" EXACT [] "double negative 3" EXACT [] "preT.DN3.Th" EXACT [] "TN3 cell" EXACT [] "TN3 thymocyte" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000893(thymocyte),CL:0002489(double negative thymocyte) |
|---|---|
| develops_from: | CL:0000806(DN2 thymocyte) |
Children
| develops from: | CL:0000808 (DN4 thymocyte) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000807 (DN3 thymocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
