CL:0002588: Difference between revisions
From FANTOM5_SSTAR
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|id=CL:0002588
|name=smooth muscle cell of the umbilical vein
|namespace=cell
|def="A smooth muscle cell of the umbilical vein." [GOC:tfm]
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|is_a=CL:0000359
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Revision as of 17:41, 15 June 2012
Name: | smooth muscle cell of the umbilical vein |
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Namespace: | cell |
Definition: | "A smooth muscle cell of the umbilical vein." [GOC:tfm] |
Created by: | tmeehan |
Creation date: | 2011-03-06T05:00:51Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | CL:0000359(vascular associated smooth muscle cell) |
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part_of: | UBERON:0002066(umbilical vein) |
Children
derives from: | FF:0000177 (human smooth muscle cell of umbilical vein sample) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11541-120B2 (Smooth Muscle Cells - Umbilical Vein, donor1)
- 11621-122B1 (Smooth Muscle Cells - Umbilical Vein, donor2)
- 11702-123B1 (Smooth Muscle Cells - Umbilical Vein, donor3)
Mouse (Mus musculus)
- 11541-120B2 (Smooth Muscle Cells - Umbilical Vein, donor1)
- 11621-122B1 (Smooth Muscle Cells - Umbilical Vein, donor2)
- 11702-123B1 (Smooth Muscle Cells - Umbilical Vein, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002588 (smooth muscle cell of the umbilical vein), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data