UBERON:0002546: Difference between revisions
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|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
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Revision as of 17:02, 26 June 2012
| Name: | cranial placode | ||
|---|---|---|---|
| Definition: | "Ectodermal placode that develops in the head into a part of the sensory nervous system. With a few exceptions (lens, adenohypophyseal), cranial placodes are neurogenic" https://github.com/seger/aao/issues/4, UBERON:cjm | ||
| Xrefs: |
| ||
| Synonyms: | "placode" BROAD [Wikipedia:Placode] | ||
| Comments: | Editor note: to avoid confusion, we include neurogenic placode as a subclass. Do not merge. Terminological notes: The term placode or placodes also applies to developing organs such as teeth, mammary glands, hair follicles, feathers and scales. We include a separate parent class for this. Taxon notes: Comparisons of developmental gene expression suggest that the anterior ectoderm in amphioxus may be homologous to the vertebrate olfactory placode, the only vertebrate placode with primary, not secondary, neurons[PMID:11523831]. | ||
| Alt_id: | UBERON:MIAA_0000369-XAO_0000305 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005085(ectodermal placode) |
|---|
Children
| is a: | UBERON:0003073 (lens placode),UBERON:0009122 (adenohypophyseal placode),UBERON:0009955 (neurogenic placode) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002546 (cranial placode), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.41e-88 | FFCP PHASE2:Hg19::chr22:25595823..25595826,+#_d7408ddd600950bd0d37a333082a72a5 | p1@CRYBB3 |
| 1.41e-88 | FFCP PHASE1:Hg19::chr22:25595823..25595826,+#_d7408ddd600950bd0d37a333082a72a5 | p1@CRYBB3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:16651649..16651655,+#_e751c663870c04b3e9be3a6d17109921 | p@chr1:16651649..16651655, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:103146966..103146971,-#_e751c663870c04b3e9be3a6d17109921 | p@chr15:103146966..103146971, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:29935952..29935993,+#_e751c663870c04b3e9be3a6d17109921 | p7@Pkn3 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:55256373..55256384,+#_e751c663870c04b3e9be3a6d17109921 | p@chr19:55256373..55256384, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:78322370..78322376,-#_e751c663870c04b3e9be3a6d17109921 | p4@uc007rhb.1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:109052262..109052291,-#_e751c663870c04b3e9be3a6d17109921 | p1@Tomt |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:12848147..12848162,+#_e751c663870c04b3e9be3a6d17109921 | p@chr15:12848147..12848162, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:101908153..101908163,+#_e751c663870c04b3e9be3a6d17109921 | p@chr4:101908153..101908163, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:31283085..31283097,-#_e751c663870c04b3e9be3a6d17109921 | p@chr14:31283085..31283097, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:154459184..154459195,+#_e751c663870c04b3e9be3a6d17109921 | p@chr3:154459184..154459195, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:67011941..67011951,+#_e751c663870c04b3e9be3a6d17109921 | p3@Gm1322 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:113251614..113251623,+#_e751c663870c04b3e9be3a6d17109921 | p@chr6:113251614..113251623, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:63733478..63733491,-#_e751c663870c04b3e9be3a6d17109921 | p1@Dytn |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:10536767..10536777,-#_e751c663870c04b3e9be3a6d17109921 | p@chr19:10536767..10536777, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:58283583..58283607,-#_e751c663870c04b3e9be3a6d17109921 | p@chr13:58283583..58283607, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:21028739..21028785,-#_e751c663870c04b3e9be3a6d17109921 | p1@Tmc1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:35012397..35012405,+#_e751c663870c04b3e9be3a6d17109921 | p@chr3:35012397..35012405, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:89215306..89215315,+#_e751c663870c04b3e9be3a6d17109921 | p@chr15:89215306..89215315, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:107349430..107349440,-#_e751c663870c04b3e9be3a6d17109921 | p3@Otogl |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_e751c663870c04b3e9be3a6d17109921 | p2@9230102O04Rik |
| 1.87e-86 | FFCP PHASE1:Mm9::chrX:154140781..154140788,+#_e751c663870c04b3e9be3a6d17109921 | p@chrX:154140781..154140788, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:69811606..69811616,+#_e751c663870c04b3e9be3a6d17109921 | p2@Otol1 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:55256373..55256384,+#_e751c663870c04b3e9be3a6d17109921 | p@chr19:55256373..55256384, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:60561636..60561645,-#_e751c663870c04b3e9be3a6d17109921 | p@chr1:60561636..60561645, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:8405038..8405048,-#_e751c663870c04b3e9be3a6d17109921 | p@chr11:8405038..8405048, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207887..42207960,-#_e751c663870c04b3e9be3a6d17109921 | p1@Tecta |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:141605556..141605563,-#_e751c663870c04b3e9be3a6d17109921 | p@chr7:141605556..141605563, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:30710403..30710406,-#_e751c663870c04b3e9be3a6d17109921 | p10@Otof |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:66860888..66860899,+#_e751c663870c04b3e9be3a6d17109921 | p@chr9:66860888..66860899, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:8405038..8405048,-#_e751c663870c04b3e9be3a6d17109921 | p@chr11:8405038..8405048, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:93235253..93235264,+#_e751c663870c04b3e9be3a6d17109921 | p@chr1:93235253..93235264, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:31335953..31335957,-#_e751c663870c04b3e9be3a6d17109921 | p3@Tmprss3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr8:94180607..94180619,-#_e751c663870c04b3e9be3a6d17109921 | p@chr8:94180607..94180619, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:30710403..30710406,-#_e751c663870c04b3e9be3a6d17109921 | p10@Otof |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:172843885..172843890,-#_e751c663870c04b3e9be3a6d17109921 | p@chr1:172843885..172843890, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:13508015..13508019,+#_e751c663870c04b3e9be3a6d17109921 | p@chr12:13508015..13508019, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207792..42207805,-#_e751c663870c04b3e9be3a6d17109921 | p11@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42206745..42206774,-#_e751c663870c04b3e9be3a6d17109921 | p@chr9:42206745..42206774, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:67011921..67011934,+#_e751c663870c04b3e9be3a6d17109921 | p2@Gm1322 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:63099970..63099980,-#_e751c663870c04b3e9be3a6d17109921 | p@chr14:63099970..63099980, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:78322370..78322376,-#_e751c663870c04b3e9be3a6d17109921 | p4@uc007rhb.1 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:182528371..182528385,+#_e751c663870c04b3e9be3a6d17109921 | p@chr1:182528371..182528385, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr16:93971357..93971363,-#_e751c663870c04b3e9be3a6d17109921 | p@chr16:93971357..93971363, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:128881546..128881553,-#_e751c663870c04b3e9be3a6d17109921 | p@chr2:128881546..128881553, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr8:13414289..13414295,+#_e751c663870c04b3e9be3a6d17109921 | p@chr8:13414289..13414295, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:66860888..66860899,+#_e751c663870c04b3e9be3a6d17109921 | p@chr9:66860888..66860899, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:53464178..53464186,+#_e751c663870c04b3e9be3a6d17109921 | p@chr2:53464178..53464186, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:109265277..109265288,-#_e751c663870c04b3e9be3a6d17109921 | p4@Chrna10 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:102297747..102297765,+#_e751c663870c04b3e9be3a6d17109921 | p@chr14:102297747..102297765, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:115556939..115556945,+#_e751c663870c04b3e9be3a6d17109921 | p4@Kncn |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:47293487..47293493,-#_e751c663870c04b3e9be3a6d17109921 | p@chr14:47293487..47293493, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:65641741..65641748,+#_e751c663870c04b3e9be3a6d17109921 | p@chr15:65641741..65641748, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:109905399..109905416,+#_e751c663870c04b3e9be3a6d17109921 | p@chr12:109905399..109905416, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:139597684..139597691,+#_e751c663870c04b3e9be3a6d17109921 | p@chr7:139597684..139597691, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:27964761..27964768,+#_e751c663870c04b3e9be3a6d17109921 | p@chr7:27964761..27964768, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42208142..42208157,-#_e751c663870c04b3e9be3a6d17109921 | p10@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:151505798..151505818,-#_e751c663870c04b3e9be3a6d17109921 | p21@Espn |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:76964459..76964469,+#_e751c663870c04b3e9be3a6d17109921 | p15@Mctp1 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:97109753..97109764,+#_e751c663870c04b3e9be3a6d17109921 | p3@Epyc |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:27964761..27964768,+#_e751c663870c04b3e9be3a6d17109921 | p@chr7:27964761..27964768, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:121206677..121206683,-#_e751c663870c04b3e9be3a6d17109921 | p3@Strc |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:94371127..94371139,-#_e751c663870c04b3e9be3a6d17109921 | p@chr11:94371127..94371139, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr18:81314626..81314636,+#_e751c663870c04b3e9be3a6d17109921 | p@chr18:81314626..81314636, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:89215319..89215330,+#_e751c663870c04b3e9be3a6d17109921 | p@chr15:89215319..89215330, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:109052297..109052300,-#_e751c663870c04b3e9be3a6d17109921 | p2@Tomt |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:4140290..4140321,+#_e751c663870c04b3e9be3a6d17109921 | p2@Gpr152 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:11599532..11599539,-#_e751c663870c04b3e9be3a6d17109921 | p@chr11:11599532..11599539, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:73232344..73232356,-#_e751c663870c04b3e9be3a6d17109921 | p@chr2:73232344..73232356, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:172843885..172843890,-#_e751c663870c04b3e9be3a6d17109921 | p@chr1:172843885..172843890, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:107349309..107349318,-#_e751c663870c04b3e9be3a6d17109921 | p4@Otogl |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:94627290..94627299,-#_e751c663870c04b3e9be3a6d17109921 | p@chr1:94627290..94627299, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:3909310..3909321,+#_e751c663870c04b3e9be3a6d17109921 | p@chr5:3909310..3909321, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:182528371..182528385,+#_e751c663870c04b3e9be3a6d17109921 | p@chr1:182528371..182528385, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207983..42207995,-#_e751c663870c04b3e9be3a6d17109921 | p3@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207777..42207789,-#_e751c663870c04b3e9be3a6d17109921 | p7@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:13983102..13983126,+#_e751c663870c04b3e9be3a6d17109921 | p@chr17:13983102..13983126, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:93235253..93235264,+#_e751c663870c04b3e9be3a6d17109921 | p@chr1:93235253..93235264, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:133957514..133957529,+#_e751c663870c04b3e9be3a6d17109921 | p@chr7:133957514..133957529, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:107349378..107349390,-#_e751c663870c04b3e9be3a6d17109921 | p1@Otogl |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:13983198..13983203,+#_e751c663870c04b3e9be3a6d17109921 | p@chr17:13983198..13983203, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:109905468..109905474,+#_e751c663870c04b3e9be3a6d17109921 | p@chr12:109905468..109905474, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:43699188..43699216,+#_e751c663870c04b3e9be3a6d17109921 | p@chr13:43699188..43699216, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207375..42207384,-#_e751c663870c04b3e9be3a6d17109921 | p@chr9:42207375..42207384, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:113251606..113251613,+#_e751c663870c04b3e9be3a6d17109921 | p@chr6:113251606..113251613, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr16:93971325..93971337,-#_e751c663870c04b3e9be3a6d17109921 | p@chr16:93971325..93971337, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:100724698..100724706,+#_e751c663870c04b3e9be3a6d17109921 | p@chr3:100724698..100724706, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:31335869..31335899,-#_e751c663870c04b3e9be3a6d17109921 | p1@Tmprss3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:144115382..144115389,+#_e751c663870c04b3e9be3a6d17109921 | p@chr5:144115382..144115389, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr8:13435173..13435186,+#_e751c663870c04b3e9be3a6d17109921 | p6@Fam70b |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:78322383..78322395,-#_e751c663870c04b3e9be3a6d17109921 | p2@uc007rhb.1 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:58283583..58283607,-#_e751c663870c04b3e9be3a6d17109921 | p@chr13:58283583..58283607, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:109052297..109052300,-#_e751c663870c04b3e9be3a6d17109921 | p2@Tomt |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:4689837..4689845,-#_e751c663870c04b3e9be3a6d17109921 | p@chr11:4689837..4689845, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:154459231..154459240,+#_e751c663870c04b3e9be3a6d17109921 | p@chr3:154459231..154459240, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:67011956..67011967,+#_e751c663870c04b3e9be3a6d17109921 | p1@Gm1322 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:10536797..10536802,-#_e751c663870c04b3e9be3a6d17109921 | p@chr19:10536797..10536802, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207965..42207978,-#_e751c663870c04b3e9be3a6d17109921 | p5@Tecta |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:27252925..27252939,+#_e751c663870c04b3e9be3a6d17109921 | p@chr17:27252925..27252939, + |
