Personal tools

UBERON:0006514: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 5: Line 5:
|def="Part of what are called the basal ganglia of the brain which consist of the globus pallidus and the ventral pallidum." [http://www.medterms.com/script/main/art.asp?articlekey=11614]
|def="Part of what are called the basal ganglia of the brain which consist of the globus pallidus and the ventral pallidum." [http://www.medterms.com/script/main/art.asp?articlekey=11614]
|xref=ABA:PAL;;FMA:83684;;MA:0000889
|xref=ABA:PAL;;FMA:83684;;MA:0000889
|is_a=UBERON:0002020;;UBERON:0003528
|is_a=UBERON:0003528
|synonym="neuraxis pallidum" EXACT [FMA:83684];;"pallidum of neuraxis" EXACT [FMA:83684]
|synonym="neuraxis pallidum" EXACT [FMA:83684];;"pallidum of neuraxis" EXACT [FMA:83684]
|comment=
|comment=
Line 14: Line 14:
|obo_creation_date=
|obo_creation_date=
|subset=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=UBERON:0002420
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0002435
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 17:07, 26 June 2012

Name:pallidum
Definition:"Part of what are called the basal ganglia of the brain which consist of the globus pallidus and the ventral pallidum." [1]
Xrefs:
links:

ABA:PAL
FMA:83684

MA:0000889
Synonyms: "neuraxis pallidum" EXACT [FMA:83684]
"pallidum of neuraxis" EXACT [FMA:83684]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0003528(brain grey matter)



Children

part of:UBERON:0001875 (globus pallidus)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006514 (pallidum), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data